Detail information of GWHGAAEX016777/evm.TU.scaffold_79.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4557 | 1.00E-109 | Origin recognition complex, subunit 6 |
| nr | gi|743773379|ref|XP_010917031.1| | 4.25E-130 | PREDICTED: origin recognition complex subunit 6 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|A2YNY4|ORC6_ORYSI | 3.00E-124 | Origin of replication complex subunit 6 {ECO:0000305} |
| trEMBL | tr|A0A096U8Y3|A0A096U8Y3_MAIZE | 3.00E-124 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM5G825512_P01} |
| TAIR | AT1G26840 | 1.00E-109 | origin recognition complex protein 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000082 | 89779 | 98107 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016777
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05460.12 | ORC6 | 4 | 92 | 1.30E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02608 | ORC6 | Cell cycle | map04110 |
| Cell cycle - yeast | map04111 | ||
| Meiosis - yeast | map04113 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006260 | Biological Process | DNA replication |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005664 | Cellular Component | nuclear origin of replication recognition complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.440 |
| SRR2545915 | Juvenile tuber | 7.330 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.690 |
| SRR5643514 | five period of Gastrodia elata | 16.170 | |
| SRR5643515 | five period of Gastrodia elata | 14.550 | |
| SRR5643524 | five period of Gastrodia elata | 12.950 | |
| SRR5643525 | five period of Gastrodia elata | 5.420 | |
| SRR5643528 | five period of Gastrodia elata | 3.130 | |
| SRR5643658 | five period of Gastrodia elata | 4.450 | |
| SRR5643659 | five period of Gastrodia elata | 9.030 | |
| SRR5643660 | five period of Gastrodia elata | 8.370 | |
| SRR5643661 | five period of Gastrodia elata | 8.120 | |
| SRR5643662 | five period of Gastrodia elata | 4.730 | |
| SRR5643663 | five period of Gastrodia elata | 8.100 | |
| SRR5643664 | five period of Gastrodia elata | 4.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.010 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.220 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.630 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.470 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.100 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.240 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.950 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.950 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.73 |
| Juven | Juvenile tuber | 38.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 24.63 | |
| Mother_Juven | Mother tuber of Juvenile | 30.54 |