Detail information of GWHGAAEX016793/evm.TU.scaffold_79.20
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1638 | 4.00E-72 | Steroid reductase |
| nr | gi|695018340|ref|XP_009396129.1| | 2.75E-77 | PREDICTED: steroid 5-alpha-reductase DET2 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q38944|DET2_ARATH | 1.00E-72 | Steroid 5-alpha-reductase DET2 |
| trEMBL | tr|M0SN32|M0SN32_MUSAM | 1.00E-77 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P11670_001} |
| TAIR | AT2G38050 | 4.00E-72 | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000082 | 520618 | 521707 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016793
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02544.15 | Steroid_dh | 120 | 268 | 1.30E-39 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K09591 | DET2 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Brassinosteroid biosynthesis | map00905 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006629 | Biological Process | lipid metabolic process |
| GO:0016627 | Molecular Function | oxidoreductase activity, acting on the CH-CH group of donors |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.220 |
| SRR2545915 | Juvenile tuber | 0.690 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.720 |
| SRR5643514 | five period of Gastrodia elata | 8.760 | |
| SRR5643515 | five period of Gastrodia elata | 3.760 | |
| SRR5643524 | five period of Gastrodia elata | 3.740 | |
| SRR5643525 | five period of Gastrodia elata | 6.830 | |
| SRR5643528 | five period of Gastrodia elata | 2.450 | |
| SRR5643658 | five period of Gastrodia elata | 3.870 | |
| SRR5643659 | five period of Gastrodia elata | 1.380 | |
| SRR5643660 | five period of Gastrodia elata | 2.010 | |
| SRR5643661 | five period of Gastrodia elata | 1.680 | |
| SRR5643662 | five period of Gastrodia elata | 3.600 | |
| SRR5643663 | five period of Gastrodia elata | 1.870 | |
| SRR5643664 | five period of Gastrodia elata | 3.600 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 29.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.750 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.030 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.780 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.710 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.940 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.580 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.580 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.87 |
| Juven | Juvenile tuber | 14.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.68 | |
| Mother_Juven | Mother tuber of Juvenile | 4.88 |