Detail information of GWHGAAEX016795/evm.TU.scaffold_79.22


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|94967924|ref|YP_589972.1|2.00E-125NAD-dependent epimerase/dehydratase [Candidatus Koribacter versatilis Ellin345]
KOGKOG14290dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase
nrgi|703121302|ref|XP_010102294.1|0GDP-mannose 3,5-epimerase 1 [Morus notabilis]
Swissprottr|A3C4S4|GME1_ORYSJ0GDP-mannose 3,5-epimerase 1
trEMBLtr|W9RI64|W9RI64_9ROSA0GDP-mannose 3,5-epimerase 1 {ECO:0000313|EMBL:EXB93237.1}
TAIRAT5G288400GDP-D-mannose 3',5'-epimerase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000082531352534497+
Transcript Sequence

Network for GWHGAAEX016795

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01370.20Epimerase312714.60E-45
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K10046GME Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ascorbate and aldarate metabolismmap00053
Amino sugar and nucleotide sugar metabolismmap00520

Gene Ontology

GO term OntologyName
GO:0051287Molecular FunctionNAD binding
GO:0003824Molecular Functioncatalytic activity
GO:0047918Molecular FunctionGDP-mannose 3,5-epimerase activity
GO:0050662Molecular Functioncoenzyme binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms74.420
SRR2545915Juvenile tuber74.540
SRP108465SRR5643513five period of Gastrodia elata165.780
SRR5643514five period of Gastrodia elata195.260
SRR5643515five period of Gastrodia elata139.960
SRR5643524five period of Gastrodia elata165.260
SRR5643525five period of Gastrodia elata75.740
SRR5643528five period of Gastrodia elata46.660
SRR5643658five period of Gastrodia elata70.710
SRR5643659five period of Gastrodia elata115.220
SRR5643660five period of Gastrodia elata98.770
SRR5643661five period of Gastrodia elata114.650
SRR5643662five period of Gastrodia elata84.140
SRR5643663five period of Gastrodia elata122.800
SRR5643664five period of Gastrodia elata77.980
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_199.300
SRR6049655Rhizomagastrodiae_C368-T10_good_1137.720
SRR6049656Rhizomagastrodiae_C368-T07_good_1116.490
SRR6049657Rhizomagastrodiae_C368-T07_good_186.350
SRR6049658Rhizomagastrodiae_C368-T04_good_151.100
SRR6049659Rhizomagastrodiae_C368-T04_good_149.250
SRR6049660Rhizomagastrodiae_C368-T01_good_173.770
SRR6049661Rhizomagastrodiae_C368-T04_good_181.400
SRR6049662Rhizomagastrodiae_C368-T01_good_1156.760
SRR6049663Rhizomagastrodiae_C368-T01_good_1101.250
SRR6049664Rhizomagastrodiae_C368-T10_good_1220.880
SRR6049665Rhizomagastrodiae_C368-T10_good_1220.880
SRP279888GastroGastrodia elata tuber 50.10
JuvenJuvenile tuber85.32
Mother_GastroMother tuber of Gastrodia elata 58.16
Mother_JuvenMother tuber of Juvenile 44.00