Detail information of GWHGAAEX016812/evm.TU.scaffold_79.41
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|397690231|ref|YP_006527485.1| | 7.00E-28 | serine/threonine protein kinase with PASTA sensor(s) [Melioribacter roseus P3M-2] |
| KOG | KOG0589 | 0 | Serine/threonine protein kinase |
| nr | gi|743760701|ref|XP_010938371.1| | 0 | PREDICTED: serine/threonine-protein kinase Nek2 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q2QMH1|NEK2_ORYSJ | 0 | Serine/threonine-protein kinase Nek2 |
| trEMBL | tr|M0TM65|M0TM65_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P03130_001} |
| TAIR | AT3G04810 | 0 | NIMA-related kinase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000082 | 880105 | 885087 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016812
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 8 | 261 | 2.80E-62 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | NEK |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.130 |
| SRR2545915 | Juvenile tuber | 3.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.310 |
| SRR5643514 | five period of Gastrodia elata | 15.420 | |
| SRR5643515 | five period of Gastrodia elata | 9.130 | |
| SRR5643524 | five period of Gastrodia elata | 8.980 | |
| SRR5643525 | five period of Gastrodia elata | 0.860 | |
| SRR5643528 | five period of Gastrodia elata | 0.770 | |
| SRR5643658 | five period of Gastrodia elata | 1.870 | |
| SRR5643659 | five period of Gastrodia elata | 4.250 | |
| SRR5643660 | five period of Gastrodia elata | 3.230 | |
| SRR5643661 | five period of Gastrodia elata | 4.020 | |
| SRR5643662 | five period of Gastrodia elata | 3.860 | |
| SRR5643663 | five period of Gastrodia elata | 4.150 | |
| SRR5643664 | five period of Gastrodia elata | 2.810 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.470 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.940 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.800 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.090 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 24.410 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.690 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 18.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 18.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.17 |
| Juven | Juvenile tuber | 3.33 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.75 | |
| Mother_Juven | Mother tuber of Juvenile | 1.03 |