Detail information of GWHGAAEX016816/evm.TU.scaffold_79.46


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743864244|ref|XP_010943982.1|3.28E-36PREDICTED: centromere protein X [Elaeis guineensis]
trEMBLtr|A0A067K7I4|A0A067K7I4_JATCU4.00E-36Uncharacterized protein {ECO:0000313|EMBL:KDP31003.1}
TAIRAT1G787902.00E-13Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000082962493968586+
Transcript Sequence

Network for GWHGAAEX016816

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module5

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF09415.9CENP-X791402.80E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15360STRA13, CENPX, MHF2 Fanconi anemia pathway map03460

Gene Ontology

GO term OntologyName
GO:0006281Biological ProcessDNA repair
GO:0051382Biological Processkinetochore assembly

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.200
SRR2545915Juvenile tuber2.120
SRP108465SRR5643513five period of Gastrodia elata2.290
SRR5643514five period of Gastrodia elata5.060
SRR5643515five period of Gastrodia elata2.490
SRR5643524five period of Gastrodia elata3.900
SRR5643525five period of Gastrodia elata2.220
SRR5643528five period of Gastrodia elata1.550
SRR5643658five period of Gastrodia elata2.200
SRR5643659five period of Gastrodia elata0.310
SRR5643660five period of Gastrodia elata0.170
SRR5643661five period of Gastrodia elata0.520
SRR5643662five period of Gastrodia elata0.860
SRR5643663five period of Gastrodia elata0.260
SRR5643664five period of Gastrodia elata0.630
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11.130
SRR6049655Rhizomagastrodiae_C368-T10_good_13.450
SRR6049656Rhizomagastrodiae_C368-T07_good_10.470
SRR6049657Rhizomagastrodiae_C368-T07_good_10.430
SRR6049658Rhizomagastrodiae_C368-T04_good_10.710
SRR6049659Rhizomagastrodiae_C368-T04_good_10.210
SRR6049660Rhizomagastrodiae_C368-T01_good_10.160
SRR6049661Rhizomagastrodiae_C368-T04_good_12.300
SRR6049662Rhizomagastrodiae_C368-T01_good_11.880
SRR6049663Rhizomagastrodiae_C368-T01_good_10.850
SRR6049664Rhizomagastrodiae_C368-T10_good_12.030
SRR6049665Rhizomagastrodiae_C368-T10_good_12.030
SRP279888GastroGastrodia elata tuber 0.91
JuvenJuvenile tuber0.33
Mother_GastroMother tuber of Gastrodia elata 0.22
Mother_JuvenMother tuber of Juvenile 0.32