Detail information of GWHGAAEX016817/evm.TU.scaffold_79.47


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|256822280|ref|YP_003146243.1|1.00E-175carbamoyl-phosphate synthase L chain ATP-binding [Kangiella koreensis DSM 16069]
KOGKOG023803-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit
nrgi|672143593|ref|XP_008795681.1|0PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform X1 [Phoenix dactylifera]
Swissprottr|Q42523|MCCA_ARATH0Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial (Precursor)
trEMBLtr|D7TE06|D7TE06_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI28729.3}
TAIRAT1G030900methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA)

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000829869601040389+
Transcript Sequence

Network for GWHGAAEX016817

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00289.21Biotin_carb_N471551.60E-44
PF02786.16CPSase_L_D21603681.20E-76
PF02785.18Biotin_carb_C3764542.70E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01968E6.4.1.4A Metabolic pathways map01100
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0046872Molecular Functionmetal ion binding
GO:0005524Molecular FunctionATP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.690
SRR2545915Juvenile tuber21.070
SRP108465SRR5643513five period of Gastrodia elata22.310
SRR5643514five period of Gastrodia elata25.350
SRR5643515five period of Gastrodia elata20.720
SRR5643524five period of Gastrodia elata29.350
SRR5643525five period of Gastrodia elata15.950
SRR5643528five period of Gastrodia elata12.660
SRR5643658five period of Gastrodia elata13.170
SRR5643659five period of Gastrodia elata12.510
SRR5643660five period of Gastrodia elata25.140
SRR5643661five period of Gastrodia elata12.520
SRR5643662five period of Gastrodia elata8.610
SRR5643663five period of Gastrodia elata11.760
SRR5643664five period of Gastrodia elata12.370
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_135.000
SRR6049655Rhizomagastrodiae_C368-T10_good_128.230
SRR6049656Rhizomagastrodiae_C368-T07_good_133.640
SRR6049657Rhizomagastrodiae_C368-T07_good_136.420
SRR6049658Rhizomagastrodiae_C368-T04_good_137.920
SRR6049659Rhizomagastrodiae_C368-T04_good_143.200
SRR6049660Rhizomagastrodiae_C368-T01_good_138.360
SRR6049661Rhizomagastrodiae_C368-T04_good_140.430
SRR6049662Rhizomagastrodiae_C368-T01_good_137.510
SRR6049663Rhizomagastrodiae_C368-T01_good_141.400
SRR6049664Rhizomagastrodiae_C368-T10_good_135.320
SRR6049665Rhizomagastrodiae_C368-T10_good_135.320
SRP279888GastroGastrodia elata tuber 18.74
JuvenJuvenile tuber18.22
Mother_GastroMother tuber of Gastrodia elata 14.39
Mother_JuvenMother tuber of Juvenile 12.69