Detail information of GWHGAAEX016820/evm.TU.scaffold_79.48
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502744|ref|YP_001958461.1| | 6.00E-30 | hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2] |
| KOG | KOG0192 | 0 | Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs |
| nr | gi|743760670|ref|XP_010938227.1| | 0 | PREDICTED: serine/threonine-protein kinase HT1-like [Elaeis guineensis] |
| Swissprot | tr|Q2MHE4|HT1_ARATH | 2.00E-68 | Serine/threonine-protein kinase HT1 |
| trEMBL | tr|B9HK02|B9HK02_POPTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:EEE89910.2} |
| TAIR | AT3G22750 | 0 | Protein kinase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000082 | 1072881 | 1093679 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016820
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07714.16 | Pkinase_Tyr | 75 | 352 | 1.10E-57 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | TKL-Pl-4 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 18.960 |
| SRR2545915 | Juvenile tuber | 14.020 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.350 |
| SRR5643514 | five period of Gastrodia elata | 16.540 | |
| SRR5643515 | five period of Gastrodia elata | 18.280 | |
| SRR5643524 | five period of Gastrodia elata | 16.460 | |
| SRR5643525 | five period of Gastrodia elata | 20.510 | |
| SRR5643528 | five period of Gastrodia elata | 19.720 | |
| SRR5643658 | five period of Gastrodia elata | 21.600 | |
| SRR5643659 | five period of Gastrodia elata | 19.460 | |
| SRR5643660 | five period of Gastrodia elata | 21.500 | |
| SRR5643661 | five period of Gastrodia elata | 21.930 | |
| SRR5643662 | five period of Gastrodia elata | 19.130 | |
| SRR5643663 | five period of Gastrodia elata | 17.780 | |
| SRR5643664 | five period of Gastrodia elata | 20.790 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.460 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.080 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.020 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 18.510 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.100 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.660 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.960 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.300 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.570 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.570 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.55 |
| Juven | Juvenile tuber | 18.85 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 20.00 | |
| Mother_Juven | Mother tuber of Juvenile | 20.69 |