Detail information of GWHGAAEX016821/evm.TU.scaffold_79.49
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|347539363|ref|YP_004846788.1| | 8.00E-92 | homocysteine S-methyltransferase [Pseudogulbenkiania sp. NH8B] |
| KOG | KOG1579 | 2.00E-158 | Homocysteine S-methyltransferase |
| nr | gi|743760666|ref|XP_010938205.1| | 0 | PREDICTED: homocysteine S-methyltransferase 2-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9M1W4|HMT2_ARATH | 5.00E-159 | Homocysteine S-methyltransferase 2 |
| trEMBL | tr|M0TS48|M0TS48_MUSAM | 2.00E-171 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P20450_001} |
| TAIR | AT3G63250 | 2.00E-158 | homocysteine methyltransferase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000082 | 1094219 | 1098317 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016821
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02574.15 | S-methyl_trans | 26 | 337 | 4.40E-77 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00547 | mmuM, BHMT2 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Cysteine and methionine metabolism | map00270 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009086 | Biological Process | methionine biosynthetic process |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0047150 | Molecular Function | betaine-homocysteine S-methyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 36.980 |
| SRR2545915 | Juvenile tuber | 34.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.760 |
| SRR5643514 | five period of Gastrodia elata | 24.260 | |
| SRR5643515 | five period of Gastrodia elata | 24.350 | |
| SRR5643524 | five period of Gastrodia elata | 23.770 | |
| SRR5643525 | five period of Gastrodia elata | 43.500 | |
| SRR5643528 | five period of Gastrodia elata | 21.040 | |
| SRR5643658 | five period of Gastrodia elata | 30.990 | |
| SRR5643659 | five period of Gastrodia elata | 31.700 | |
| SRR5643660 | five period of Gastrodia elata | 33.940 | |
| SRR5643661 | five period of Gastrodia elata | 30.430 | |
| SRR5643662 | five period of Gastrodia elata | 31.310 | |
| SRR5643663 | five period of Gastrodia elata | 32.460 | |
| SRR5643664 | five period of Gastrodia elata | 35.370 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.050 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.360 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 18.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 22.360 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.720 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.460 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.560 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.550 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.340 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 56.44 |
| Juven | Juvenile tuber | 58.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 37.17 | |
| Mother_Juven | Mother tuber of Juvenile | 38.68 |