Detail information of GWHGAAEX016825/evm.TU.scaffold_79.53


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|325958081|ref|YP_004289547.1|1.00E-14proteasome endopeptidase complex subunit beta [Methanobacterium sp. AL-21]
KOGKOG01774.00E-11920S proteasome, regulatory subunit beta type PSMB2/PRE1
nrgi|672125246|ref|XP_008786037.1|6.53E-132PREDICTED: proteasome subunit beta type-2-B-like [Phoenix dactylifera]
Swissprottr|O23714|PSB2A_ARATH1.00E-119Proteasome subunit beta type-2-A
trEMBLtr|M0TS43|M0TS43_MUSAM5.00E-131Proteasome subunit beta type {ECO:0000256|RuleBase:RU004203}
TAIRAT3G226304.00E-11920S proteasome beta subunit D1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008211577361172662+
Transcript Sequence

Network for GWHGAAEX016825

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00227.25Proteasome31822.30E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02734PSMB2 Proteasome map03050

Gene Ontology

GO term OntologyName
GO:0051603Biological Processproteolysis involved in cellular protein catabolic process
GO:0004298Molecular Functionthreonine-type endopeptidase activity
GO:0005839Cellular Componentproteasome core complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms68.860
SRR2545915Juvenile tuber85.810
SRP108465SRR5643513five period of Gastrodia elata183.830
SRR5643514five period of Gastrodia elata192.640
SRR5643515five period of Gastrodia elata184.000
SRR5643524five period of Gastrodia elata202.500
SRR5643525five period of Gastrodia elata159.680
SRR5643528five period of Gastrodia elata174.760
SRR5643658five period of Gastrodia elata162.930
SRR5643659five period of Gastrodia elata180.710
SRR5643660five period of Gastrodia elata200.470
SRR5643661five period of Gastrodia elata207.760
SRR5643662five period of Gastrodia elata187.470
SRR5643663five period of Gastrodia elata186.750
SRR5643664five period of Gastrodia elata194.650
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1179.430
SRR6049655Rhizomagastrodiae_C368-T10_good_1299.030
SRR6049656Rhizomagastrodiae_C368-T07_good_1201.890
SRR6049657Rhizomagastrodiae_C368-T07_good_1170.600
SRR6049658Rhizomagastrodiae_C368-T04_good_1156.980
SRR6049659Rhizomagastrodiae_C368-T04_good_1152.280
SRR6049660Rhizomagastrodiae_C368-T01_good_1168.550
SRR6049661Rhizomagastrodiae_C368-T04_good_1168.620
SRR6049662Rhizomagastrodiae_C368-T01_good_1212.010
SRR6049663Rhizomagastrodiae_C368-T01_good_1186.110
SRR6049664Rhizomagastrodiae_C368-T10_good_1243.260
SRR6049665Rhizomagastrodiae_C368-T10_good_1243.260
SRP279888GastroGastrodia elata tuber 211.07
JuvenJuvenile tuber236.22
Mother_GastroMother tuber of Gastrodia elata 181.09
Mother_JuvenMother tuber of Juvenile 192.99