Detail information of GWHGAAEX016836/evm.TU.scaffold_79.69


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|220917205|ref|YP_002492509.1|7.00E-113lipoyl synthase [Anaeromyxobacter dehalogenans 2CP-1]
KOGKOG26723.00E-151Lipoate synthase
nrgi|672139525|ref|XP_008793547.1|0PREDICTED: lipoyl synthase 1, chloroplastic isoform X1 [Phoenix dactylifera]
Swissprottr|B9RX57|LISC_RICCO0Lipoyl synthase, chloroplastic {ECO:0000255|HAMAP-Rule:MF_03129} (Precursor)
trEMBLtr|A0A059A950|A0A059A950_EUCGR0Lipoyl synthase, chloroplastic {ECO:0000256|HAMAP-Rule:MF_03129}
TAIRAT5G084103.00E-151ferredoxin/thioredoxin reductase subunit A (variable subunit) 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008212966481303651-
Transcript Sequence

Network for GWHGAAEX016836

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16881.4LIAS_N671202.40E-08
PF04055.20Radical_SAM1503104.70E-11
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K03644lipA, LIAS, LIP1, LIP5 Metabolic pathways map01100
Lipoic acid metabolismmap00785

Gene Ontology

GO term OntologyName
GO:0009107Biological Processlipoate biosynthetic process
GO:0016992Molecular Functionlipoate synthase activity
GO:0003824Molecular Functioncatalytic activity
GO:0051539Molecular Function4 iron, 4 sulfur cluster binding
GO:0051536Molecular Functioniron-sulfur cluster binding
GO:0009507Cellular Componentchloroplast

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.660
SRR2545915Juvenile tuber13.420
SRP108465SRR5643513five period of Gastrodia elata18.950
SRR5643514five period of Gastrodia elata21.460
SRR5643515five period of Gastrodia elata17.440
SRR5643524five period of Gastrodia elata17.110
SRR5643525five period of Gastrodia elata8.460
SRR5643528five period of Gastrodia elata8.950
SRR5643658five period of Gastrodia elata9.870
SRR5643659five period of Gastrodia elata14.720
SRR5643660five period of Gastrodia elata12.020
SRR5643661five period of Gastrodia elata14.470
SRR5643662five period of Gastrodia elata13.140
SRR5643663five period of Gastrodia elata14.730
SRR5643664five period of Gastrodia elata12.830
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.400
SRR6049655Rhizomagastrodiae_C368-T10_good_113.320
SRR6049656Rhizomagastrodiae_C368-T07_good_115.270
SRR6049657Rhizomagastrodiae_C368-T07_good_115.260
SRR6049658Rhizomagastrodiae_C368-T04_good_111.130
SRR6049659Rhizomagastrodiae_C368-T04_good_111.910
SRR6049660Rhizomagastrodiae_C368-T01_good_113.330
SRR6049661Rhizomagastrodiae_C368-T04_good_114.640
SRR6049662Rhizomagastrodiae_C368-T01_good_118.450
SRR6049663Rhizomagastrodiae_C368-T01_good_115.540
SRR6049664Rhizomagastrodiae_C368-T10_good_116.810
SRR6049665Rhizomagastrodiae_C368-T10_good_116.810
SRP279888GastroGastrodia elata tuber 20.36
JuvenJuvenile tuber31.37
Mother_GastroMother tuber of Gastrodia elata 14.11
Mother_JuvenMother tuber of Juvenile 17.47