Gene detail

Detail information of GWHGAAEX016843/evm.TU.scaffold_79.77

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|470181905\|ref\|YP_007567780.1\|	2.00E-25	RalF protein, translocated into host cells by the Dot/Icm system [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
KOG	KOG0928	0	Pattern-formation protein/guanine nucleotide exchange factor
nr	gi\|743875395\|ref\|XP_010907327.1\|	0	PREDICTED: ARF guanine-nucleotide exchange factor GNOM-like [Elaeis guineensis]
Swissprot	tr\|Q42510\|GNOM_ARATH	0	ARF guanine-nucleotide exchange factor GNOM
trEMBL	tr\|A0A061EHQ8\|A0A061EHQ8_THECC	0	Sec7 domain-containing protein {ECO:0000313\|EMBL:EOY01829.1}
TAIR	AT1G13980	0	sec7 domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000082	1416295	1432684	+

Transcript Sequence
>GWHTAAEX016843 ATGGGCCGCCTTGACCTCCACAATCCTGGCATAGATCCTATTCAGGAAGAATCGCTTGACGATGACTGCGGCAATCGATCATTTCCATCGCCGGAGTTGTCATCCTGCCCAGTCTCTTCCGGCCATGCTATGGCATGTATGATAAACTCAGAGGTTAACGCCGTCCTCGCCGTCATGCGTCGTAACGTCCGGTGGGGCGGCGGCCATACTTCCGCTGAAGAAGATTACCTCGACCACTCCCTTATCCAATCGCTCAAATCGCTTCGTCGCCAGATCTTCGTCTGGGACTCCAATCAATGGAGCTCCATCGACCCGATTCTCTACCTCCGTCCTTTCCTCAACGTCGTCCGCTCCGATGAAACCGGCGCCCCTATCACTGGTGTCGCCATTTCTTCCCTACACAAATTTGTCACCTTCGAGATGTTCGAGACCGGAACCGCCAACGTTGCTGAAGCGATGAACGCCATCGTGGATGCGGTGACGAGCTGCCGGTTTGAAGTAACAGATCCTTCTTCCGAGGAAACCGTGCTGATGAAGATACTTCAGTTGCTACTAGCGTGCATGAGATGCCGGGCTTCTAGGGTTCTCAGTAACCAACATGTTTGCACCATTGTGAACACTTGCTTTAGAATTGTTCACCAGGCAACCGCAAAAGGGGAACTTTTACAGAGAATCTCTCGCCACACGATGCGTGAGCTTGTCCGGTGCATCTTCTTCCATTTACCTGAAGTTAGTGAAAATTTTTTCGAGGCAGCACCTAATGCTGAGAAGGCTGATTTCACAAAGGTTGACTATTTTGAATTGAAACAAGAGGGGAATTGTAATAGGAATTTAATTTCATTGACAGCCTCGGTATATGATATTAATGTGGCGGGGTTGGAAACATCCAAAGGTATAAACGTGATTCTGGGGCCATATGGTATACCATGCATGGTAGAGATATTCCACTTCTTGTGTTCTCTTTTGAATATTTCTGATCAGATCTGGATGAGTCCTAGGGCAAGCCACATAGCTTTGGAGGAAGATGTACCCCTTTTTGCTCTTGGGATGATCAACTCTGCTATCGAGCTGGGGGGTTCTTCAATAGGAAAACATTCTAAACTGCTTTCTTTGATCCAGGATGAGCTTTTTTGGAATTTAATGCAGTTTGGCTTATCATATAGTTCACTAATACTTTCCACAATTTGTAGTATAGTTCTGAATCTATACTATCACTTGCGAGTGGAACTTAAACTGCAGCTTGAAGCATTCTTCTCGTTTGTAATTTTAAGGCTGGCACAAGGAAAGTATGGGGCTACATACCATCAGCAAGAAGTTGCATTGGAGGCCTTGGTGGACTTTTGCAGGCAGAAAAATTTCATGGCAGAGATGTATGCCAACCTGGATTGTGATATAGCTTGCAACAATGCATTTGAAGAGATCATTAATCTCTTGTCAAGATGCGCATTCCCTGTGAACCGTCCTTTATCTGTAATACATATTCTTGCTTTGGAAGGTCTTACTGCTGTGATTCAGGGAATGGTAAATAGAATAGGTAACCGGCCTTACAAGTCTCAAGAAGCTCCACTAGCACCAGATGAATATACTCCGTTTTGGAGTGTGAAGTGTGAGAACTATTCTGATCCTGAACATTGTCTTAAATTTGTTCGTAGTAGGAAATACATCAAGAGAAGGTTAATGAATGGTGCTGATCATTTTAATAGGGATCTAGAGAAGGGCCTTGAATATTTGCAGGGAATTCATTTATTGCCTGAGAAACTTGACCCTAAAAGCGTGGCATATTTTTTCAGGTTCACTACTGGATTGGATAAAACCCTTGTTGGGGATTTCTTGGGAAATCACGATGAGTTCTGTGTCCAAGTTCTTCATGAATTTGCTGGCACGTTTGATTTCCAGGATTTGAATCTAGATACTGCTTTAAGAATCTTCCTGGAAACTTTCCGCCTACCTGGTGAGTCGCAGAAGATACAGAGGGTGCTTGAGGCATTTTCTGAAAGATATTATGAGCAGGCACCTCATATTTTTGTCAACAAGGATGCTGCCTTTTTATTATCATACTCACTCATAATGCTCAATACAGACCAACACAATGTGCAGATAAAGAAGAAGATGACAGAAGAGGGTTTCATAAGGAACAATCATCACATTAACGGTGGGAATGATCTACCCAGGGAATTATTATCTGAACTTTATCAATCTATATGCAAGAATGAAATAAGAATCACTCCTGATCAAGGTTTTGGTGTTCCAGAGATGTCCCCAAGCCGTTGGATTGATCTAATGAAAAAGTCAAAAGTGACATCTCCCTTTTTTGTCTTTGATTTTCTGCCACACCTTGATTATGATATGTTAAAGATTATGTCAAGCCCTACAATCGCTGCTATCTCTGTGGTATTTGATCATGCAGAGCTTGAAGATGTTCTCCTGGTCTGTGTGAATGGCTTCTTGGAAGTGGGAAGGTTATCAGCATACTACAATCTTGAAGATGTATTAGATGACATTATTGCATCTCTTTGCAAGTTCATAACCCTGCTGAATCCTTCTATGTTTGAGGAACCTGTTGCAGCATATGGGGATGACACCAAAGCTAGGTTAGCATCTGAGACTGTTTTTTACATAGCAAATAATTATGGTAATCATATCCGTTGTGGTTGGAGAAACATCTTTGATTGCATCTTAAGATTGCATAGAATAGGCCTTCTACCTTCATACTTGGCTAGTAATGCAGCTGATGAAGTAGAGTCAACTGCTGGCACGACATTTGAAAATCCTCCTCTCGGCTCTCTCTCAGCATCCAATATACCATCTGTGGGTATCCATCGTAAACCTTCTAGTCTAATGAGCAGGTTTAGCCAGTTACTATATTTTGAAACAGAGGAATTAAAAGTAGCTCCGACGGAGCAGCAACTCGCGGCTCATCAGAGAGCACATCAGACGATTCAGAACTGTCACGTAAACAACATATTCACAGAAAGCAAGTTCCTTCATGCTGACTCGCTGCTGTATCTTACAAGAGCTCTTATCTTGGAAGCAGATAGACTTCCAAAGGCCAGCAGGTCACCAAATGAGGAAGATGTGGCTGTTTTCTGCTTAGAGCTTCTCATTGCTATCACATTGAATAATCGAGATAGAATTGTTCTTATTTGGAAGGATGTGTATGAGCACATATCCAATATAGTCCAGTCTAGTGCCATGCCCTGCGCTCTTGTAGAAAAGGCAGTGTTTGGGCTTCTTAGAATCTGCCAGCGATTACTTCCATACAAGGAGAATCTGATTGATGAGCTTCTCACGTCACTGCAGTTGGTGTTGAAACTTGATGCCCGTGTAGCTGATACTTACTGTGAGAATATCACACAGGAAATTACACTATTGGTTAAAGAAAATTCTACTCACATAAAGTCTCAGATGGGTTGGAAGACCATTATCTCATTGTTGTCCATCACTGCTCGCCACCCTGATGCTTCTGAAGTTGGTTTTGAAGGACTGGCCTTTATCATGTCTCAAGGGGCACACCTCACGCCAGCCAACTACTTTTTCTGTATTGAAGCATCCAGACATTTTGCAGAATCTCGAGTAGGGCTTACTGATAGATCTACGCATGCACTTGATCTAATGGCTGAATCCATCATTTGCCTTGTTCGCTGGTTTGAAGAGGCTAGAAATGCAGAGGTGGATTCTGAGAAAATGATCGAAGGAATTCATGACTTATGGCTCCAACTTGTTCAAGCTCTGAGAAAGGTGACATTGGATCAAAGAGAGGATATCAGAAATCATGCCTTGTTATCATTACAGAAGTGCCTGGCAGGAGCGGAAGGAATTTTTCTGTCACCTTCTGTTTGGCTGCAATTTTTTGATATTGTTTTATTTAGGATGCTTGATGACTTGCTGGGAATTGCTTTGAGTCCATCACAAAAGGATTACCGGAACATGGAGGGAACTCTTGTGCATGCTGTGAAGTTACTCTCCGAAATATTTTTGCAGCTGTTCCACGAACTTTCAAGATTAAGCAGTTTCTGTAAGATTTGGCTTGGGGTTCTTAATCGCATGGAGAAGATCATGAGGATAAAATTTAGAGGCAGAAGAGGTGGGAAGCTCCAAGAGCTGGTCCTTGAGTTGCTTAAGAACATATTGCACGTGATGAAGTCAACAGGAGTTCTTGCAAAAAACAGCGCTGTATGTGGAGACAGTTTGTGGGAATTGACATGCTTCCATCTGAACAACTTTGCTCCATCACTTCAATCTGAAGTATTGACTTGTAGTGAATTGGAGCATAAAGATCCCAGTTGCCAGGTACAACTTGATGGGAGTGCCTCTGAAAATAATACTAATAATCTGACTGAAGGCCAAAGATGA

Network for GWHGAAEX016843

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12783.6	Sec7_N	309	469	1.70E-29
PF01369.19	Sec7	556	739	1.00E-61

Protein Sequence

>GWHPAAEX016843
MGRLDLHNPGIDPIQEESLDDDCGNRSFPSPELSSCPVSSGHAMACMINSEVNAVLAVMRRNVRWGGGHTSAEEDYLDHSLIQSLKSLRRQIFVWDSNQWSSIDPILYLRPFLNVVRSDETGAPITGVAISSLHKFVTFEMFETGTANVAEAMNAIVDAVTSCRFEVTDPSSEETVLMKILQLLLACMRCRASRVLSNQHVCTIVNTCFRIVHQATAKGELLQRISRHTMRELVRCIFFHLPEVSENFFEAAPNAEKADFTKVDYFELKQEGNCNRNLISLTASVYDINVAGLETSKGINVILGPYGIPCMVEIFHFLCSLLNISDQIWMSPRASHIALEEDVPLFALGMINSAIELGGSSIGKHSKLLSLIQDELFWNLMQFGLSYSSLILSTICSIVLNLYYHLRVELKLQLEAFFSFVILRLAQGKYGATYHQQEVALEALVDFCRQKNFMAEMYANLDCDIACNNAFEEIINLLSRCAFPVNRPLSVIHILALEGLTAVIQGMVNRIGNRPYKSQEAPLAPDEYTPFWSVKCENYSDPEHCLKFVRSRKYIKRRLMNGADHFNRDLEKGLEYLQGIHLLPEKLDPKSVAYFFRFTTGLDKTLVGDFLGNHDEFCVQVLHEFAGTFDFQDLNLDTALRIFLETFRLPGESQKIQRVLEAFSERYYEQAPHIFVNKDAAFLLSYSLIMLNTDQHNVQIKKKMTEEGFIRNNHHINGGNDLPRELLSELYQSICKNEIRITPDQGFGVPEMSPSRWIDLMKKSKVTSPFFVFDFLPHLDYDMLKIMSSPTIAAISVVFDHAELEDVLLVCVNGFLEVGRLSAYYNLEDVLDDIIASLCKFITLLNPSMFEEPVAAYGDDTKARLASETVFYIANNYGNHIRCGWRNIFDCILRLHRIGLLPSYLASNAADEVESTAGTTFENPPLGSLSASNIPSVGIHRKPSSLMSRFSQLLYFETEELKVAPTEQQLAAHQRAHQTIQNCHVNNIFTESKFLHADSLLYLTRALILEADRLPKASRSPNEEDVAVFCLELLIAITLNNRDRIVLIWKDVYEHISNIVQSSAMPCALVEKAVFGLLRICQRLLPYKENLIDELLTSLQLVLKLDARVADTYCENITQEITLLVKENSTHIKSQMGWKTIISLLSITARHPDASEVGFEGLAFIMSQGAHLTPANYFFCIEASRHFAESRVGLTDRSTHALDLMAESIICLVRWFEEARNAEVDSEKMIEGIHDLWLQLVQALRKVTLDQREDIRNHALLSLQKCLAGAEGIFLSPSVWLQFFDIVLFRMLDDLLGIALSPSQKDYRNMEGTLVHAVKLLSEIFLQLFHELSRLSSFCKIWLGVLNRMEKIMRIKFRGRRGGKLQELVLELLKNILHVMKSTGVLAKNSAVCGDSLWELTCFHLNNFAPSLQSEVLTCSELEHKDPSCQVQLDGSASENNTNNLTEGQR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18443	GBF1	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0032012	Biological Process	regulation of ARF protein signal transduction
GO:0005086	Molecular Function	ARF guanyl-nucleotide exchange factor activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	14.500
SRP064423	SRR2545915	Juvenile tuber	15.440
SRP108465	SRR5643513	five period of Gastrodia elata	12.340
	SRR5643514	five period of Gastrodia elata	12.670
	SRR5643515	five period of Gastrodia elata	13.930
	SRR5643524	five period of Gastrodia elata	14.700
	SRR5643525	five period of Gastrodia elata	12.330
	SRR5643528	five period of Gastrodia elata	11.130
	SRR5643658	five period of Gastrodia elata	10.210
	SRR5643659	five period of Gastrodia elata	16.490
	SRR5643660	five period of Gastrodia elata	16.560
	SRR5643661	five period of Gastrodia elata	16.360
	SRR5643662	five period of Gastrodia elata	14.940
	SRR5643663	five period of Gastrodia elata	15.470
	SRR5643664	five period of Gastrodia elata	15.150
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.750
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.780
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.720
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.850
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.730
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.210
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.910
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.370
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.010
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.110
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.110
SRP279888	Gastro	Gastrodia elata tuber	13.03
	Juven	Juvenile tuber	14.13
	Mother_Gastro	Mother tuber of Gastrodia elata	10.77
	Mother_Juven	Mother tuber of Juvenile	14.48