Gene detail

Detail information of GWHGAAEX016848/evm.TU.scaffold_79.83

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1901	8.00E-161	Uncharacterized high-glucose-regulated protein
nr	gi\|695022766\|ref\|XP_009398525.1\|	0	PREDICTED: YTH domain-containing family protein 2-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|A9LNK9\|CPSF_ARATH	2.00E-10	30-kDa cleavage and polyadenylation specificity factor 30 {ECO:0000303\|PubMed:18479511}
trEMBL	tr\|M0SQV1\|M0SQV1_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P21380_001}
TAIR	AT3G13460	8.00E-161	evolutionarily conserved C-terminal region 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000082	1518124	1522984	+

Transcript Sequence
>GWHTAAEX016848 AAAATATTAAAATCGGTGTTAAATGTTATTGCACATAATTATCTTTTTAAATTTTAAAATAAAGTAAACGTGGAAAAAATTCCGGTTTTGTTGGCGGAGCCGTGGAGCTATTTGAATCATCGCTTCCTGTGATCAAAACCCTCTCCTTCTCCTGTGGCGGCGCTCCCTCTTTTTCCTTCTAGGGTTTTTCCGATTTTCCTACCTTCGATATCTAGGTTGATCTTCCTCGTTCCCTTATCTACCAGGTTAGGGTTTGGATCTGTAGTCCTCCACCTTCTCGGTATCTTGGCACTTCTCTGCCCAATCCCGCCGAGCGAGATCCGATTATGGCGGCCGTTGCCCCCGCTGCAGATCAAGCAACAGATTTGCTGCAGAAGCTGACGTTGGATTCTAAGAACAAGACTCATGACGCTCCTGATGTTGCTAAGAAGCCATCTGGGATTCAGTATGGGCCACCAAATGCTGTGGAAGCATCCAAGGTTCCGGCCCCTTCATCAGAGCGATCTGTGACTCCTGTTCTTCCAGAGTACATGGATCACAATATTTGGTATCTACATAATGGATACCCTTCATCGGCCTATTACTATAGAGGTTATGATGGTTCGATGGGAGAGTGGGATGATTATTCTAGATATTTAAACCCTGAAGGAGTGGAGGTGCCGCATGGAGTTTACGGTGACATGTATCACCATGGATATGGTTACACACCTTATGGTGCTTACCCTTCTTCTGGATCTGCTGTTCCATCTCTTGGCCATGACAACCAAGTGTATGGTGCTCAACATTATCAGTATCCTTCCTATTTCCAGCCACAAGCAGTTGCTAGTGGAACATACTCTTCAAACGGTGCTCCTACTCATGTAGAAGCCAATTCAGCTGTCGTTGCAGATCAGCCGACTGTAATTGCAGATGCTCCTAAACCAAATTCAAATGGGGTCAATAATGTGAGTGCTGCAGCTGGGAACAATGGGTCTGTGCCTTTGAAACAGAGCCAGCGAAATTCAACCCTGACTTCAAATGGCTCATATGGCAGGGGAGTTTTGCTTGGTGGACACCCCTCTCCCGGATATCAGGACCCAAGATACAATTTTGACGGCATGCGCTCACCCATTCCATGGTATGATGGATCCGCCTTCTCGGATGCTTATGCTAGATCAGCTACAACCAATTCGGTGCCTTCAACTGCTTCACATAACACGAATTCAGTACCTGTGAGAAATCAGAATGTTCGTTCCGTTCCCCAAGTCTTGGGTTTCAATTCCCCAAGACCAGCAGCTCATAGCATCATAAACAACATGTATCCAACTAACAGGATGTATGGGCAGTGCGGCAACGCATACAGATCTGGAACCCCTTTTGGAGCCAATATATATGATTCTAGAATGAATGGTCGTTGGAACATGTTTCCTGATGGTAAGTACAACAAGCCTAGGGGCCGTGGTAATGGCCTCTATGGCTTCGGCAATGATAATGGTGATGGATTGAGTGAGCTGAACAGAGGGCCGAGGGCCAATCGCATTAAAAATTACAAGGCTCCTGTATCTTCAACAATCACTATAGCTACAAAAGGGCAGGCACTCCCTGCTTATGAAAATATCGATGATCCCAGCATTGTCCCAGGCAGGGAGCAGTACAACAGACCCGATTTCTCCGATACATACTCAGAAGCCAAGTTTTTTGTCATCAAGTCTTACAGCGAAGATGATATTCACAAGAGCATAAAGTACAATGTCTGGGCTAGCACGCCCAATGGTAACAAGAAGCTTGATTCTGCTTACAAGGAGGCAACGGAAATGGTTGTTGATTGCCCTGTGTTTCTGTTCTTCTCTGTGAATACTAGTGGGCAGTTTGTTGGAGTTGCGGAAATGGTTGGGCCCGTTGATTTTAATAAGACGGTCGATTACTGGCAGCAGGACAAGTGGAATGGCTGCTTCAATGTGAAGTGGCATATTGTGAAAGATGTTCCTAACAACGCTCTGAAACACATCATAATAGAGAGCAACGACAACAAGCCGGTGACAAACAGCAGGGACACTCAGGAGGTGAAGCTCGAGCAAGGCAATCAGATTCTGAAGATTTTCAAGGAGCATATCAGCAAGACGTGCATTTTGGATGATTTTGGTTTCTATGAGACCCGCCAAAAGGTGATGCAGGAAAAGAGGGCAAAACAACTGCAGCACTGCAAGCTGATTGTTGCTGATTTAAAGCCGGTTGAAACTGTGGATGCAAAAGGAAAGGATGGGATCATCATAAACGGAAACGTTAGATTGCAGAAACCGTCAGAACCAGTTACAGTCTTAAAGAAGGAAGCAGCTGCTGTTGTTTCTGCTGTCATTGTTGAGCAGAAGCCATCCGAAGAGAATTTTTTGCCCGAAAAAAGAACGGATACAAACAGTGCTGCTGCAGCTGCTGCAGCTGCTGCTGATTCAGGCTAAAATGCTGTCTTTATATAAAATGGCTTATTACAGCATCTTGCTGCTGGGGAAGAAGTTGACTCTCTTGTGTTCAATTTGGAGCTCTGTGACACGGCTGAGGTTCTCTCTCTTTGTCAAGAGTCACTTTGGGTGAACTCTTTTTCTACTTCTGTAGTTGGTAGGCGCTAATTACTCTCTTCTATACTTGCCCGTTCTGCAATTTTAGATTAATGTCTTTCTTTAATGTTTTTCTTGTTTTTTATCTCGGTTTCTTATTGTTATATTGTGTTTCTTTTTTGGGTTTTTTTTAAATGGGGTTTGAAGTGTGTCTGTTCTCATATATATTATAGATCTCTTCTTGTAAAGAGGCTTTCTCTTCTTCTTTCTGCCTTTGCCTTTGTACTTGAAAAGAATCATATTAAGTTTCAACAATGCAATTGCAGTCCTTTGAACGGCCCAACAAATGCTGCTGCACTTATCTTTACTGCTTTTTTTCCATTGTATCGCTCATTTATTATGCTGTAATAAAGGTGTTATTAAAAGTTGCCTTTTTTATTTATTTATTTGGAAAGAGTCGGTCTTATTTTAAGCCAAAATATTTGATTAGTGAGATTTTAATTCTTGATCTGTCAACTACAATATCCTTCGCAATTAATGTAAGTTTTAATTAAATATTT

Network for GWHGAAEX016848

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04146.14	YTH	449	586	1.80E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2206.160
SRP064423	SRR2545915	Juvenile tuber	1582.280
SRP108465	SRR5643513	five period of Gastrodia elata	537.880
	SRR5643514	five period of Gastrodia elata	390.570
	SRR5643515	five period of Gastrodia elata	372.830
	SRR5643524	five period of Gastrodia elata	372.930
	SRR5643525	five period of Gastrodia elata	613.110
	SRR5643528	five period of Gastrodia elata	327.030
	SRR5643658	five period of Gastrodia elata	557.270
	SRR5643659	five period of Gastrodia elata	569.170
	SRR5643660	five period of Gastrodia elata	801.440
	SRR5643661	five period of Gastrodia elata	538.840
	SRR5643662	five period of Gastrodia elata	665.340
	SRR5643663	five period of Gastrodia elata	711.770
	SRR5643664	five period of Gastrodia elata	876.270
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	837.990
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	844.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	703.370
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1066.930
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1005.770
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1359.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	959.770
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	947.870
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	494.840
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	707.110
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	421.790
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	421.790
SRP279888	Gastro	Gastrodia elata tuber	590.15
	Juven	Juvenile tuber	507.94
	Mother_Gastro	Mother tuber of Gastrodia elata	307.38
	Mother_Juven	Mother tuber of Juvenile	434.33