Detail information of GWHGAAEX016849/evm.TU.scaffold_79.84


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16016.00E-35GATA-4/5/6 transcription factors
nrgi|743761021|ref|XP_010940106.1|1.90E-58PREDICTED: GATA transcription factor 2-like [Elaeis guineensis]
Swissprottr|O49741|GATA2_ARATH2.00E-35GATA transcription factor 2
trEMBLtr|A0A067KXQ6|A0A067KXQ6_JATCU2.00E-53Uncharacterized protein {ECO:0000313|EMBL:KDP39718.1}
TAIRAT2G450506.00E-35GATA transcription factor 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008215330681534791-
Transcript Sequence

Network for GWHGAAEX016849

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00320.26GATA1702047.70E-16
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms47.170
SRR2545915Juvenile tuber73.640
SRP108465SRR5643513five period of Gastrodia elata84.500
SRR5643514five period of Gastrodia elata39.520
SRR5643515five period of Gastrodia elata100.470
SRR5643524five period of Gastrodia elata46.490
SRR5643525five period of Gastrodia elata11.190
SRR5643528five period of Gastrodia elata3.750
SRR5643658five period of Gastrodia elata7.250
SRR5643659five period of Gastrodia elata86.410
SRR5643660five period of Gastrodia elata79.050
SRR5643661five period of Gastrodia elata87.710
SRR5643662five period of Gastrodia elata73.440
SRR5643663five period of Gastrodia elata94.350
SRR5643664five period of Gastrodia elata46.240
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_128.720
SRR6049655Rhizomagastrodiae_C368-T10_good_132.030
SRR6049656Rhizomagastrodiae_C368-T07_good_119.370
SRR6049657Rhizomagastrodiae_C368-T07_good_119.720
SRR6049658Rhizomagastrodiae_C368-T04_good_19.040
SRR6049659Rhizomagastrodiae_C368-T04_good_18.870
SRR6049660Rhizomagastrodiae_C368-T01_good_112.040
SRR6049661Rhizomagastrodiae_C368-T04_good_110.580
SRR6049662Rhizomagastrodiae_C368-T01_good_113.040
SRR6049663Rhizomagastrodiae_C368-T01_good_114.600
SRR6049664Rhizomagastrodiae_C368-T10_good_125.950
SRR6049665Rhizomagastrodiae_C368-T10_good_125.950
SRP279888GastroGastrodia elata tuber 14.74
JuvenJuvenile tuber8.74
Mother_GastroMother tuber of Gastrodia elata 5.30
Mother_JuvenMother tuber of Juvenile 8.92