Gene detail

Detail information of GWHGAAEX016850/evm.TU.scaffold_79.85

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|308050067\|ref\|YP_003913633.1\|	8.00E-164	transketolase central region [Ferrimonas balearica DSM 9799]
KOG	KOG0525	0	Branched chain alpha-keto acid dehydrogenase E1, beta subunit
nr	gi\|695051695\|ref\|XP_009413882.1\|	0	PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9SAV3\|ODBB1_ARATH	0	2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial (Precursor)
trEMBL	tr\|M0TS37\|M0TS37_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P20340_001}
TAIR	AT1G55510	0	branched-chain alpha-keto acid decarboxylase E1 beta subunit

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000082	1544235	1577877	+

Transcript Sequence
>GWHTAAEX016850 CTCGACCGTTAGCTGGCGTGATTAACTGCCCCTTCCCTGATTATCGTGAGAACATTTGCTCCTTCGATTATTGCAGTGATCCACAAATTATAAGTTGAGCCGGCCGAGCTCTCTCTTTCTCTGCTAGATCTCCCTCCCAAAAAATACCAATACACCCTTGAATTTAAGATTGATCGAAAATGGCGCTGCCTTTGAGGAGGGAAATACGAAAAGGGCTAAACGCCGCGGCAAGGAGCTTCTCAAAGTCTTCTGAAGTGATGGAATCGACGAGAGAGGGGAAGCCAACCAATCTCTTTTCTGCAATTAATCAGGCTCTGCACATCGCTCTCGAGACCGACCCTCGTGCTTATGTCTTTGGAGAGGATGTGGGCTTTGGTGGTGTTTTTCGCTGCACAACTGGATTAGCTGATCGATTTGGTAAAAGTAGAGTATTCAATACCCCGTTATGTGAACAGGGAATTGCTGGATTTGCTATAGGATTGGCAGCAATGGGAAATCGAGCTATAGCAGAAATTCAATTTGCAGACTATATCTTTCCTGCTTTTGACCAGCTTGTAAATGAAGCAGCTAAGTTCAGATACAGAAGTGGTAATGAGTTCAATTGTGGAGGTTTGACTGTAAGAACTCCATATGGAGCTGTTGGCCATGGTGGCCATTATCATTCACAATCACCAGAGGCTTTCTTCTGTCATGTCCCTGGTCTCAAGGTGGTGATACCTCGAGGCCCACAACAAGCGAAGGGTCTTCTACTATCCAGTATTCGTGATCCAAACCCAGTTGTTTTCTTTGAGCCCAAGTGGCTATATAGATTGGCTGTGGAAGAAGTACCTGAGCATGACTATATGTTGCCCCTTTCTGAGGCAGAGGTGATTCGCCAAGGTAGTGACATAACACTTGTTGGTTGGGGAGCTCAAATTTCAGTTTTGGAACAGGCCTGCGATGATGCCGCTAAGGATGGAATATCTTGTGAGCTCATAGATCTGCAAACTTTGATACCTTGGGATAGGGATACAGTGGAAGCTTCGGTAAAAAAAACTGGAAGATTGCTCGTCAGTCATGAAGCCCCTGTAACAGGAGGTTTTGGTGCTGAGATATCTTCTTCCATCACCGAACGCTGCTTCCTTAGGCTGGAAGCTCCTGTAGCCAGAGTGTGCGGTCTGGACACACCATTCCCTCTTGTTTTTGAGTCATTCTATATGCCAACGAAGAACAAGATCTTAGATGCAATCAAAGAAACTGTAAGGTATTAAATAAACTGAAGCAATTTCCACTGCCTCTCCCCTGCTAGTGAGGAGGCCGTCTTCTGTAGATTTTTTTATGTAGATATCTCTGAACCTTATATTAACCCTTTAATATGTACACACATATATATATACACAGTTAAATAAAGTTTCGTGATGAGATGTTTGTATGTTATTTGTAAAACCTGAGGAATACATAAATTCCAGTGTTAATTTTGAAGCTCCCAATTTATCCCAGTTTTGTTCAGAGCTGAGACAAGGGATTGCTTGTTTGTAAGTGCTATATATATATATATATACACATT

Network for GWHGAAEX016850

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02779.23	Transket_pyr	39	210	1.20E-43
PF02780.19	Transketolase_C	227	346	3.10E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00167	BCKDHB, bkdA2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of antibiotics	map01130
		Propanoate metabolism	map00640
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	14.400
SRP064423	SRR2545915	Juvenile tuber	27.350
SRP108465	SRR5643513	five period of Gastrodia elata	25.440
	SRR5643514	five period of Gastrodia elata	29.400
	SRR5643515	five period of Gastrodia elata	23.920
	SRR5643524	five period of Gastrodia elata	32.070
	SRR5643525	five period of Gastrodia elata	16.980
	SRR5643528	five period of Gastrodia elata	17.620
	SRR5643658	five period of Gastrodia elata	19.090
	SRR5643659	five period of Gastrodia elata	25.530
	SRR5643660	five period of Gastrodia elata	23.040
	SRR5643661	five period of Gastrodia elata	26.680
	SRR5643662	five period of Gastrodia elata	20.570
	SRR5643663	five period of Gastrodia elata	21.640
	SRR5643664	five period of Gastrodia elata	24.230
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	24.210
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.680
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	26.080
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.160
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	21.850
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	24.210
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	26.360
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.400
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	26.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.920
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.920
SRP279888	Gastro	Gastrodia elata tuber	29.02
	Juven	Juvenile tuber	32.88
	Mother_Gastro	Mother tuber of Gastrodia elata	23.79
	Mother_Juven	Mother tuber of Juvenile	30.53