Detail information of GWHGAAEX016851/evm.TU.scaffold_79.86
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|530780070|ref|YP_008431875.1| | 1.00E-43 | hypothetical protein N186_02405 [Thermofilum sp. 1910b] |
| KOG | KOG3302 | 1.00E-136 | TATA-box binding protein (TBP), component of TFIID and TFIIIB |
| nr | gi|743886036|ref|XP_010910053.1| | 2.32E-143 | PREDICTED: TATA-box-binding protein isoform X2 [Elaeis guineensis] |
| Swissprot | tr|P26357|TBP_SOLTU | 5.00E-143 | TATA-box-binding protein |
| trEMBL | tr|B7FMY1|B7FMY1_MEDTR | 2.00E-142 | Transcription factor TFIID protein {ECO:0000313|EMBL:KEH23256.1} |
| TAIR | AT1G55520 | 1.00E-136 | TATA binding protein 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000082 | 1578478 | 1583693 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016851
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00352.20 | TBP | 24 | 103 | 4.70E-32 |
| PF00352.20 | TBP | 112 | 194 | 1.70E-32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03120 | TBP, tbp | Basal transcription factors | map03022 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006352 | Biological Process | DNA-templated transcription, initiation |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.770 |
| SRR2545915 | Juvenile tuber | 18.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.520 |
| SRR5643514 | five period of Gastrodia elata | 24.570 | |
| SRR5643515 | five period of Gastrodia elata | 21.150 | |
| SRR5643524 | five period of Gastrodia elata | 21.160 | |
| SRR5643525 | five period of Gastrodia elata | 39.030 | |
| SRR5643528 | five period of Gastrodia elata | 28.370 | |
| SRR5643658 | five period of Gastrodia elata | 39.820 | |
| SRR5643659 | five period of Gastrodia elata | 32.260 | |
| SRR5643660 | five period of Gastrodia elata | 27.720 | |
| SRR5643661 | five period of Gastrodia elata | 33.780 | |
| SRR5643662 | five period of Gastrodia elata | 31.650 | |
| SRR5643663 | five period of Gastrodia elata | 27.490 | |
| SRR5643664 | five period of Gastrodia elata | 33.990 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.370 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.750 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.370 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.610 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.070 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 23.290 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 23.290 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.23 |
| Juven | Juvenile tuber | 16.73 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 20.05 | |
| Mother_Juven | Mother tuber of Juvenile | 19.39 |