Detail information of GWHGAAEX016853/evm.TU.scaffold_79.88
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743882126|ref|XP_010909077.1| | 0 | PREDICTED: glucan endo-1,3-beta-glucosidase 8-like [Elaeis guineensis] |
| Swissprot | tr|Q6NKW9|E138_ARATH | 0 | Glucan endo-1,3-beta-glucosidase 8 (Precursor) |
| trEMBL | tr|A0A061F3H3|A0A061F3H3_THECC | 0 | O-Glycosyl hydrolases family 17 protein {ECO:0000313|EMBL:EOY11202.1} |
| TAIR | AT1G64760 | 0 | O-Glycosyl hydrolases family 17 protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000082 | 1592380 | 1597249 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016853
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00332.17 | Glyco_hydro_17 | 25 | 345 | 1.20E-66 |
| PF07983.12 | X8 | 369 | 439 | 3.50E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17 |
| Carbohydrate-Active enzymes Family | GH17 |
| Carbohydrate-Active enzymes Family | GH17 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.240 |
| SRR2545915 | Juvenile tuber | 2.670 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.590 |
| SRR5643514 | five period of Gastrodia elata | 15.480 | |
| SRR5643515 | five period of Gastrodia elata | 11.150 | |
| SRR5643524 | five period of Gastrodia elata | 15.370 | |
| SRR5643525 | five period of Gastrodia elata | 2.390 | |
| SRR5643528 | five period of Gastrodia elata | 2.310 | |
| SRR5643658 | five period of Gastrodia elata | 4.310 | |
| SRR5643659 | five period of Gastrodia elata | 10.250 | |
| SRR5643660 | five period of Gastrodia elata | 6.520 | |
| SRR5643661 | five period of Gastrodia elata | 8.610 | |
| SRR5643662 | five period of Gastrodia elata | 6.520 | |
| SRR5643663 | five period of Gastrodia elata | 9.360 | |
| SRR5643664 | five period of Gastrodia elata | 5.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.650 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.740 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.140 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.990 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.320 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.700 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.780 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.300 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.020 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.580 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.580 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.30 |
| Juven | Juvenile tuber | 2.83 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.20 | |
| Mother_Juven | Mother tuber of Juvenile | 0.85 |