Detail information of GWHGAAEX016854/evm.TU.scaffold_79.89


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG32515.00E-85Golgi SNAP receptor complex member
nrgi|719986343|ref|XP_010251670.1|9.85E-105PREDICTED: membrin-11-like [Nelumbo nucifera]
Swissprottr|Q9SJL6|MEM11_ARATH2.00E-85Membrin-11
trEMBLtr|M0SQV8|M0SQV8_MUSAM7.00E-104Membrin {ECO:0000256|PIRNR:PIRNR028865}
TAIRAT2G369005.00E-85membrin 11

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008215991351609942+
Transcript Sequence

Network for GWHGAAEX016854

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12352.7V-SNARE_C1542162.40E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08496GOSR2, BOS1 SNARE interactions in vesicular transport map04130

Gene Ontology

GO term OntologyName
GO:0016192Biological Processvesicle-mediated transport
GO:0005484Molecular FunctionSNAP receptor activity
GO:0005794Cellular ComponentGolgi apparatus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.080
SRR2545915Juvenile tuber17.980
SRP108465SRR5643513five period of Gastrodia elata16.080
SRR5643514five period of Gastrodia elata15.880
SRR5643515five period of Gastrodia elata19.170
SRR5643524five period of Gastrodia elata16.240
SRR5643525five period of Gastrodia elata29.060
SRR5643528five period of Gastrodia elata26.200
SRR5643658five period of Gastrodia elata32.520
SRR5643659five period of Gastrodia elata14.490
SRR5643660five period of Gastrodia elata16.510
SRR5643661five period of Gastrodia elata16.740
SRR5643662five period of Gastrodia elata22.540
SRR5643663five period of Gastrodia elata17.230
SRR5643664five period of Gastrodia elata16.650
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.100
SRR6049655Rhizomagastrodiae_C368-T10_good_120.940
SRR6049656Rhizomagastrodiae_C368-T07_good_116.240
SRR6049657Rhizomagastrodiae_C368-T07_good_118.760
SRR6049658Rhizomagastrodiae_C368-T04_good_116.620
SRR6049659Rhizomagastrodiae_C368-T04_good_122.140
SRR6049660Rhizomagastrodiae_C368-T01_good_118.190
SRR6049661Rhizomagastrodiae_C368-T04_good_118.350
SRR6049662Rhizomagastrodiae_C368-T01_good_116.970
SRR6049663Rhizomagastrodiae_C368-T01_good_116.280
SRR6049664Rhizomagastrodiae_C368-T10_good_118.360
SRR6049665Rhizomagastrodiae_C368-T10_good_118.360
SRP279888GastroGastrodia elata tuber 26.33
JuvenJuvenile tuber17.32
Mother_GastroMother tuber of Gastrodia elata 32.48
Mother_JuvenMother tuber of Juvenile 24.45