Detail information of GWHGAAEX016857/evm.TU.scaffold_79.93
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|226314556|ref|YP_002774452.1| | 2.00E-90 | amino acid transporter [Brevibacillus brevis NBRC 100599] |
| KOG | KOG1286 | 0 | Amino acid transporters |
| nr | gi|743885404|ref|XP_010909913.1| | 0 | PREDICTED: cationic amino acid transporter 2, vacuolar-like [Elaeis guineensis] |
| Swissprot | tr|Q9ASS7|CAAT2_ARATH | 0 | Cationic amino acid transporter 2, vacuolar |
| trEMBL | tr|M0SQV7|M0SQV7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P21440_001} |
| TAIR | AT5G36940 | 0 | cationic amino acid transporter 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000082 | 1628478 | 1652005 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016857
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13520.5 | AA_permease_2 | 84 | 466 | 1.00E-54 |
| PF13906.5 | AA_permease_C | 595 | 645 | 8.20E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 50.580 |
| SRR2545915 | Juvenile tuber | 32.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 67.810 |
| SRR5643514 | five period of Gastrodia elata | 49.960 | |
| SRR5643515 | five period of Gastrodia elata | 73.500 | |
| SRR5643524 | five period of Gastrodia elata | 77.070 | |
| SRR5643525 | five period of Gastrodia elata | 160.630 | |
| SRR5643528 | five period of Gastrodia elata | 126.490 | |
| SRR5643658 | five period of Gastrodia elata | 230.400 | |
| SRR5643659 | five period of Gastrodia elata | 36.440 | |
| SRR5643660 | five period of Gastrodia elata | 33.740 | |
| SRR5643661 | five period of Gastrodia elata | 42.650 | |
| SRR5643662 | five period of Gastrodia elata | 35.050 | |
| SRR5643663 | five period of Gastrodia elata | 42.790 | |
| SRR5643664 | five period of Gastrodia elata | 33.020 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 44.490 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 49.040 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 44.060 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 55.740 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 76.710 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 102.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 59.420 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 73.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 47.700 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 55.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 50.250 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 50.250 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 36.09 |
| Juven | Juvenile tuber | 40.38 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 116.11 | |
| Mother_Juven | Mother tuber of Juvenile | 61.78 |