Detail information of GWHGAAEX016859/evm.TU.scaffold_79.96


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|557694902|ref|YP_008797956.1|2.00E-16ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
KOGKOG04197.00E-107Ubiquitin-protein ligase
nrgi|657374188|gb|KEH19791.1|6.44E-107ubiquitin-conjugating enzyme [Medicago truncatula]
Swissprottr|P25866|UBC2_WHEAT1.00E-107Ubiquitin-conjugating enzyme E2 2
trEMBLtr|A0A072TRF9|A0A072TRF9_MEDTR2.00E-107Ubiquitin-conjugating enzyme {ECO:0000313|EMBL:KEH19791.1}
TAIRAT2G027607.00E-107ubiquiting-conjugating enzyme 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008216624401676382+
Transcript Sequence

Network for GWHGAAEX016859

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.25UQ_con81432.20E-52
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K10573UBE2A, UBC2, RAD6A Ubiquitin mediated proteolysis map04120

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3490.270
SRR2545915Juvenile tuber2869.000
SRP108465SRR5643513five period of Gastrodia elata1162.840
SRR5643514five period of Gastrodia elata852.120
SRR5643515five period of Gastrodia elata1047.280
SRR5643524five period of Gastrodia elata808.840
SRR5643525five period of Gastrodia elata1260.600
SRR5643528five period of Gastrodia elata1000.340
SRR5643658five period of Gastrodia elata1151.330
SRR5643659five period of Gastrodia elata2251.960
SRR5643660five period of Gastrodia elata2636.220
SRR5643661five period of Gastrodia elata2377.400
SRR5643662five period of Gastrodia elata3111.640
SRR5643663five period of Gastrodia elata2663.170
SRR5643664five period of Gastrodia elata3603.910
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11527.950
SRR6049655Rhizomagastrodiae_C368-T10_good_11257.750
SRR6049656Rhizomagastrodiae_C368-T07_good_11105.830
SRR6049657Rhizomagastrodiae_C368-T07_good_11671.840
SRR6049658Rhizomagastrodiae_C368-T04_good_11679.850
SRR6049659Rhizomagastrodiae_C368-T04_good_11901.310
SRR6049660Rhizomagastrodiae_C368-T01_good_11384.290
SRR6049661Rhizomagastrodiae_C368-T04_good_11405.330
SRR6049662Rhizomagastrodiae_C368-T01_good_1912.960
SRR6049663Rhizomagastrodiae_C368-T01_good_11145.730
SRR6049664Rhizomagastrodiae_C368-T10_good_11061.530
SRR6049665Rhizomagastrodiae_C368-T10_good_11061.530
SRP279888GastroGastrodia elata tuber 2,808.34
JuvenJuvenile tuber1,496.68
Mother_GastroMother tuber of Gastrodia elata 780.28
Mother_JuvenMother tuber of Juvenile 856.20