Detail information of GWHGAAEX016861/evm.TU.scaffold_79.98


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG31685.00E-79U1 snRNP component
nrgi|643726056|gb|KDP34864.1|1.78E-97hypothetical protein JCGZ_09152 [Jatropha curcas]
trEMBLtr|A0A067KSP7|A0A067KSP7_JATCU7.00E-98Uncharacterized protein {ECO:0000313|EMBL:KDP34864.1}
TAIRAT4G204405.00E-79small nuclear ribonucleoprotein associated protein B

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008217139301715187+
Transcript Sequence

Network for GWHGAAEX016861

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01423.21LSM9883.40E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11086SNRPB, SMB Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms32.880
SRR2545915Juvenile tuber43.780
SRP108465SRR5643513five period of Gastrodia elata93.780
SRR5643514five period of Gastrodia elata82.380
SRR5643515five period of Gastrodia elata83.560
SRR5643524five period of Gastrodia elata72.530
SRR5643525five period of Gastrodia elata54.420
SRR5643528five period of Gastrodia elata44.460
SRR5643658five period of Gastrodia elata41.240
SRR5643659five period of Gastrodia elata128.090
SRR5643660five period of Gastrodia elata129.630
SRR5643661five period of Gastrodia elata144.420
SRR5643662five period of Gastrodia elata138.750
SRR5643663five period of Gastrodia elata125.140
SRR5643664five period of Gastrodia elata140.530
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1114.970
SRR6049655Rhizomagastrodiae_C368-T10_good_1198.640
SRR6049656Rhizomagastrodiae_C368-T07_good_1122.620
SRR6049657Rhizomagastrodiae_C368-T07_good_1105.710
SRR6049658Rhizomagastrodiae_C368-T04_good_189.830
SRR6049659Rhizomagastrodiae_C368-T04_good_192.640
SRR6049660Rhizomagastrodiae_C368-T01_good_1110.530
SRR6049661Rhizomagastrodiae_C368-T04_good_1100.330
SRR6049662Rhizomagastrodiae_C368-T01_good_1118.550
SRR6049663Rhizomagastrodiae_C368-T01_good_1109.980
SRR6049664Rhizomagastrodiae_C368-T10_good_1150.020
SRR6049665Rhizomagastrodiae_C368-T10_good_1150.020
SRP279888GastroGastrodia elata tuber 102.31
JuvenJuvenile tuber115.89
Mother_GastroMother tuber of Gastrodia elata 33.31
Mother_JuvenMother tuber of Juvenile 48.11