Gene detail

Detail information of GWHGAAEX016865/evm.TU.scaffold_79.103

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2000	2.00E-157	Gamma-tubulin complex, DGRIP91/SPC98 component
nr	gi\|743862671\|ref\|XP_010943600.1\|	0	PREDICTED: uncharacterized protein LOC105061295 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9FG37\|GACP3_ARATH	2.00E-12	Gamma-tubulin complex component 3
trEMBL	tr\|V4RRU8\|V4RRU8_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR37258.1}
TAIR	AT3G43610	2.00E-157	Spc97 / Spc98 family of spindle pole body (SBP) component

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000082	1870696	1940422	+

Transcript Sequence
>GWHTAAEX016865 CACCTTGGTCTAGCTCCGGCGTGATATGTGGAGGAGGGCTAATTTAGGCACGGTAGCTTAACTTTATTAAAAAAAAAAGAACTAATTCGTCGTTAGAATAACAAGCCCTCAAATATTTGTAAGTCACTCGATTAACAACTAACAACTGATCGGAGAGCTGGCCCTTGAAGAGGGCATTCGTATTGGCAAAGCATATATATTTCTCAGGATTTGCAAGTTTGAGGCAAACCCCGCCCAAATGTGATACTTTGGTACAAACTCCAGGGCGTGAAAAACCCTCGGAAGAATCGATGATTTTTTTAAAACCCTAACCGATGAGTGCTGCTCATTAGGCAATGGCGAGCGACTCCGGTTTCCAGTCTTTGCTTCCTAATCTCAAGATTGACGATCCCGTGGTCCCTCCGAAGGCTTGGAAATCGATCGCTTCCGAAAGCGGGACCAGTCATTCGAGTGATCCTGCTCAAGGGCCTCAAGATACTGCATGCGAGATCTCTGCTGTCTCTGAAGCACTTCTAGTGCGATTGGCTATAAATGCACTGCAAGGCGTGAAGTCGGCAATTGTTGAGATAGACAAACTCATTATTTCATTTTGCTCGAGTTCAGCTGATGGGAGTTTTCATGGAGTTCTGAGTTTTTGGTCACGGTTATCAAGTACACATGCATTGGGAAGAATGCTCAAGTCTATCAGTCATTCAGGCCTATTTTGCTTTTTTTTACATGAGTTTGTCAATTATTTTCTTTGCAAAGATCATAAGGCTAATTTAGCTAGAAGTGCCAAGAATAAGACCTTTCTGATTCCATCAGAACAGGAACAGAGCAAAAATGAAGAGCAAGGATGCCCTCCTTTTAGCTTGGTAAATCAGGCATTTGCTGTTGCTGTTGGAAAGCTTCTTGAAGGTTATATATGTGCTTTAAATACATTATCAATGTCAACATATTTGAGACGTTCAGTACAGTGCAAAGGCAATTCTCTTCCCATTTGCCAACAAGAAGGATTTCTAACTAGTGTAGTTCTTTCAGAATTAACTGTTTTGGAAGTTTATTTGCATACTAAGGAATTGAGAACACACATTGAAGATCTTGGAAGCATATGCTTTTCACACACTTTTTATCAAGCCTTGTTAAGAGATGGCATGGGCTTGAATCCTATTGCTGATTTTATGAAGTTTCCAAGAGGAGCTGACCTGCTCACCTATTTGTATGTTCAGCTTCGAGATGCAACCCCTGCTCATTATGCACTTCTCAAATATCTGTTTCATCGCTCGTATGAGCCTTACTCTTGTTTTATCAAATCATGGATGTATAGAGCTACCATTGATGATCCTTACGGTGAATTTTATGTAGCAGAATCAAATATCACACCAATCACGGAAGCTTGCTCCCCTTTTCTTGATAAATCTTTTTTAGCCTCTATTAAGTCTGGAGTGTCAATTCCTTGTTTTTTGAAGGATGTTTGTGATCCACTACTACGAGCTGGACAGCAGCTTCAAGTTCTTGTGAAATTACTAAATGTGTGCGAGCTTTCTTCTCCAGGGAAATACGCCTCTTTTGATATGTCAATCCTCAGAGAGATACTCCCATTTTGGGTTGATTCATCAAGTAAATTGGATTTTTTATCAAATCCATTGATCTTTAACATCAATGGAATGCACGCTCTAATACGGAAGAGAGAAATTATGCACAGACATATGTTTGAAAAGCTTCAAATTTATTTTAAGAAATTGAGTCCAAAGGATAGATGGGCATCTCATAACGTTAATTCTTTTGGCTCGATGCCCATCTTGCTTGGAAGAACTAGTGTGAATTCATCATTTCATCCAGTTTTTGATGAGAAATCAAACATAACAAGTGGAAGCTTCAATGTTGCTGATGATGCAGATTCTGACACCTCTAGTTCGTTCACTGAGTCTGTACTTGAGTTGGAACCATCACTATCTACAGAAGGTTCTTCAAATGATTATAATGATGAAAACAAAGCTGCACATTTTTATGATTCACATGTCAATATGGGCCAACCATTGAAATCCTTGTTTTCAAACTTGCCCGCAGATTATGCAAAAAGCAGCATATTACAAACTTATGCCAACAAAACAAATCAGCCACACTTGAATATACCACTTCACTCATTTGCAGAGCATGTATATCCCTCCACCTTCTGTCCGTACCTTCAACATCAAAGATTGAAAGTGCATCAGATATCTGCTCCATCCAATTATGATGCTATTATGGGTCTTAAAATATCGGGGAACTTAACTGAAGTAAACCAATCTGGTGGATGTTGGCCTCTAGGTGGGCTTTTGAGCAATCCATTTTGTGCCTATAAAAAGTGCAATGGTCCTCAGGAGCGACAGTTAACTGAAAGGTGCTTTGAAAATGATGTTGAAGTTCCAGATCAATTGAAATGTGAGAAAACTTTTTTTTCTGAAGCATTTTGTTCTTTGGTGCTTAGTTTTCATGGATTAGGGGAAATGCAAACTTCAACTGGAACAATTGGGTTTCCATTTTGTCACTCTTCAAGCTGTAGATTGCCCAATACTCTTAGTATGAATCCCATGCTAACCAAAAATTCTTGGCTTCCGGTGTTGCACAACTCCAGAAATATGGGTTTTATCAGCAATTCTACATGTTTACCATATTTCAACTTCTCTTCGCTTACAGACCCTGTTAAGTTGTATATAGAAAGCTTGCCTATAAGCTCTTGTAAGATATCTATGGATGAAGCATCTATTCCTGAGAAATGTGGTGACCCTGTTAAAGCAACAGTGGAAAATCAACCCGTATCAGATTTTTGTTCAGCAAGTGAAACAAATATACAAAGAGATGCCCAACCATCTAATGCATATGGTGGAGCGGATTGGACAAAATCCTTAAACTACCCTATTAAAAATGCCACATATGATGATAGTGATATTCACTCGGAACAAAAGTTTTTGGTACCATTGGATGTCATAATTGATAAATGTATTCTACAAGAAATATTACTTCAATATAAGTATATAAGCTGCCTTACTATTCAGTTTCTTGAAGAAGGCTTTAGCTTTCGTGAATACTTGTTGGCTTTGAGGCGCTATCATTTTATGGAAATATCTGACTGGGCGGATTTGTTTGTTATGTCACTAGATTGTCAGAAATGGTCTGCATTTGAGCACGAATTGGAAGCAGCCAGGATCCAGGGTTTTCTTGATATGGCTTTACAGAGATCTTCATGTGAGAATGATCCATACAAACAAAGATTGTTCATTTACATTAAAGGGCAAAGCATTTTCCAGCCTGTTTTTGCAAATGGTGTTTGTGCTTTTGATTTTGTGGCTTTGGGTTTTCGTGTGGATTGGCCTGTCAATATTATTGTAACTCAAGATTCCTTAGAAATATATGCTAACATCTTCAGTTTCCTTATACAAATTAGGCTTGCTGTTGCTTCGTTAATTGATGTATGGCATTATCTAAAGGATGTATTCTATGTTCTTAACCTTGGTCAACAAAAAACACTTTTTGATGCTGAGAATTTCAATAGTGTGATGAGAGTGAGGCAACATATTTATTACTTCACAACGACATTACAGCAATATGTTCAATCTCAATTGTTAGAGGTTTCTTGGTGTCAATTTGAACATTCACTAAAGCATACGGTAAAGAACATAATGGACTTGGAATCTGAGCACATGTTTTATCTTACTAATGCAGTGCGCATATGTTTTTTGTCGGATAATGCTAAAGAAATAGCTGCAGTTATCAAGAATATTTTGCAGTGTGCTTTGGATTTACGCTCGTGTTTTTTGGGCAGAAGATTTGCTGGTCTTTTGAATGAAAAGGATGAATCATGCTCTCACTCTCAAATAAATTTCGCCAAGGTGGCTGATGTAAATGCCATTTTCAAGAAGAACCTGAAAGAGTTGTACCTTTTGTCTCTTAAATCGCCTAAACACGGTGAATTCAGCATTTGTCGTTTCTGGAGTAATCTCGACAGTAATGGCTTCTTCTCCAGCATCATCAGTAAAATGCCCTGAAATTTTGCATTAGCTTTTATTGTCCGTTGCTGTCTTATTATACTACTAATTCTAATAGTTCTATTTTTGTTGTGAATGATGTTGTGGTTCAATAATTGAGTTCTTGAATTTGAACTCTCTTGTCATGTCAAGTTTTTAAATGCCAGAAGCCTCATATTTATCTTATTAAAGGCTCAACGTCATTCAAAAACGAAGTTCTATTTTTGTTTATATTTTGCTTATTTTTCTAAACAATTAGCTAATGAGCAGTGTGGTGTATTGTTGTTTGCATATTGTTGAGATAAAG

Network for GWHGAAEX016865

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04130.12	Spc97_Spc98	65	1121	1.50E-50

Protein Sequence

>GWHPAAEX016865
MASDSGFQSLLPNLKIDDPVVPPKAWKSIASESGTSHSSDPAQGPQDTACEISAVSEALLVRLAINALQGVKSAIVEIDKLIISFCSSSADGSFHGVLSFWSRLSSTHALGRMLKSISHSGLFCFFLHEFVNYFLCKDHKANLARSAKNKTFLIPSEQEQSKNEEQGCPPFSLVNQAFAVAVGKLLEGYICALNTLSMSTYLRRSVQCKGNSLPICQQEGFLTSVVLSELTVLEVYLHTKELRTHIEDLGSICFSHTFYQALLRDGMGLNPIADFMKFPRGADLLTYLYVQLRDATPAHYALLKYLFHRSYEPYSCFIKSWMYRATIDDPYGEFYVAESNITPITEACSPFLDKSFLASIKSGVSIPCFLKDVCDPLLRAGQQLQVLVKLLNVCELSSPGKYASFDMSILREILPFWVDSSSKLDFLSNPLIFNINGMHALIRKREIMHRHMFEKLQIYFKKLSPKDRWASHNVNSFGSMPILLGRTSVNSSFHPVFDEKSNITSGSFNVADDADSDTSSSFTESVLELEPSLSTEGSSNDYNDENKAAHFYDSHVNMGQPLKSLFSNLPADYAKSSILQTYANKTNQPHLNIPLHSFAEHVYPSTFCPYLQHQRLKVHQISAPSNYDAIMGLKISGNLTEVNQSGGCWPLGGLLSNPFCAYKKCNGPQERQLTERCFENDVEVPDQLKCEKTFFSEAFCSLVLSFHGLGEMQTSTGTIGFPFCHSSSCRLPNTLSMNPMLTKNSWLPVLHNSRNMGFISNSTCLPYFNFSSLTDPVKLYIESLPISSCKISMDEASIPEKCGDPVKATVENQPVSDFCSASETNIQRDAQPSNAYGGADWTKSLNYPIKNATYDDSDIHSEQKFLVPLDVIIDKCILQEILLQYKYISCLTIQFLEEGFSFREYLLALRRYHFMEISDWADLFVMSLDCQKWSAFEHELEAARIQGFLDMALQRSSCENDPYKQRLFIYIKGQSIFQPVFANGVCAFDFVALGFRVDWPVNIIVTQDSLEIYANIFSFLIQIRLAVASLIDVWHYLKDVFYVLNLGQQKTLFDAENFNSVMRVRQHIYYFTTTLQQYVQSQLLEVSWCQFEHSLKHTVKNIMDLESEHMFYLTNAVRICFLSDNAKEIAAVIKNILQCALDLRSCFLGRRFAGLLNEKDESCSHSQINFAKVADVNAIFKKNLKELYLLSLKSPKHGEFSICRFWSNLDSNGFFSSIISKMP

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0043015	Molecular Function	gamma-tubulin binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.610
SRP064423	SRR2545915	Juvenile tuber	14.230
SRP108465	SRR5643513	five period of Gastrodia elata	5.920
	SRR5643514	five period of Gastrodia elata	8.030
	SRR5643515	five period of Gastrodia elata	6.720
	SRR5643524	five period of Gastrodia elata	8.340
	SRR5643525	five period of Gastrodia elata	7.010
	SRR5643528	five period of Gastrodia elata	5.820
	SRR5643658	five period of Gastrodia elata	6.680
	SRR5643659	five period of Gastrodia elata	9.470
	SRR5643660	five period of Gastrodia elata	9.900
	SRR5643661	five period of Gastrodia elata	7.490
	SRR5643662	five period of Gastrodia elata	7.440
	SRR5643663	five period of Gastrodia elata	8.120
	SRR5643664	five period of Gastrodia elata	6.910
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.810
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.130
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.460
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.490
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.830
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.470
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.670
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.480
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.860
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.270
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.270
SRP279888	Gastro	Gastrodia elata tuber	14.07
	Juven	Juvenile tuber	7.87
	Mother_Gastro	Mother tuber of Gastrodia elata	6.20
	Mother_Juven	Mother tuber of Juvenile	6.63