Detail information of GWHGAAEX016866/evm.TU.scaffold_79.105


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743774972|ref|XP_010917858.1|3.73E-123PREDICTED: uncharacterized protein LOC105042379 [Elaeis guineensis]
trEMBLtr|M0SMT5|M0SMT5_MUSAM3.00E-121Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P10680_001}
TAIRAT5G324502.00E-69RNA binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008219457081948258+
Transcript Sequence

Network for GWHGAAEX016866

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_18705.10E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms94.610
SRR2545915Juvenile tuber76.370
SRP108465SRR5643513five period of Gastrodia elata71.550
SRR5643514five period of Gastrodia elata76.290
SRR5643515five period of Gastrodia elata67.760
SRR5643524five period of Gastrodia elata81.460
SRR5643525five period of Gastrodia elata121.380
SRR5643528five period of Gastrodia elata264.730
SRR5643658five period of Gastrodia elata164.420
SRR5643659five period of Gastrodia elata65.740
SRR5643660five period of Gastrodia elata66.740
SRR5643661five period of Gastrodia elata66.420
SRR5643662five period of Gastrodia elata82.480
SRR5643663five period of Gastrodia elata62.850
SRR5643664five period of Gastrodia elata68.860
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_149.240
SRR6049655Rhizomagastrodiae_C368-T10_good_130.710
SRR6049656Rhizomagastrodiae_C368-T07_good_156.350
SRR6049657Rhizomagastrodiae_C368-T07_good_138.660
SRR6049658Rhizomagastrodiae_C368-T04_good_151.570
SRR6049659Rhizomagastrodiae_C368-T04_good_143.080
SRR6049660Rhizomagastrodiae_C368-T01_good_158.330
SRR6049661Rhizomagastrodiae_C368-T04_good_150.910
SRR6049662Rhizomagastrodiae_C368-T01_good_177.660
SRR6049663Rhizomagastrodiae_C368-T01_good_161.970
SRR6049664Rhizomagastrodiae_C368-T10_good_169.060
SRR6049665Rhizomagastrodiae_C368-T10_good_169.060
SRP279888GastroGastrodia elata tuber 53.87
JuvenJuvenile tuber51.69
Mother_GastroMother tuber of Gastrodia elata 127.08
Mother_JuvenMother tuber of Juvenile 40.05