Detail information of GWHGAAEX016867/evm.TU.scaffold_79.106
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|295696487|ref|YP_003589725.1| | 1.00E-28 | S-layer protein [Kyrpidia tusciae DSM 2912] |
| KOG | KOG1426 | 0 | FOG: RCC1 domain |
| nr | gi|743879660|ref|XP_010908454.1| | 0 | PREDICTED: uncharacterized protein LOC105034843 [Elaeis guineensis] |
| Swissprot | tr|Q9FN03|UVR8_ARATH | 8.00E-31 | Ultraviolet-B receptor UVR8 |
| trEMBL | tr|M0TM58|M0TM58_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P03060_001} |
| TAIR | AT3G03790 | 0 | ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000082 | 1968297 | 1989982 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016867
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13857.5 | Ank_5 | 49 | 99 | 5.70E-09 |
| PF00415.17 | RCC1 | 154 | 200 | 1.60E-06 |
| PF00415.17 | RCC1 | 203 | 257 | 1.90E-07 |
| PF00415.17 | RCC1 | 263 | 310 | 2.50E-11 |
| PF00415.17 | RCC1 | 313 | 364 | 1.80E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 41.310 |
| SRR2545915 | Juvenile tuber | 36.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.890 |
| SRR5643514 | five period of Gastrodia elata | 22.390 | |
| SRR5643515 | five period of Gastrodia elata | 20.730 | |
| SRR5643524 | five period of Gastrodia elata | 21.290 | |
| SRR5643525 | five period of Gastrodia elata | 26.030 | |
| SRR5643528 | five period of Gastrodia elata | 23.970 | |
| SRR5643658 | five period of Gastrodia elata | 27.900 | |
| SRR5643659 | five period of Gastrodia elata | 20.650 | |
| SRR5643660 | five period of Gastrodia elata | 20.760 | |
| SRR5643661 | five period of Gastrodia elata | 18.800 | |
| SRR5643662 | five period of Gastrodia elata | 21.010 | |
| SRR5643663 | five period of Gastrodia elata | 21.320 | |
| SRR5643664 | five period of Gastrodia elata | 24.610 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 25.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 23.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.870 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 27.890 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 29.580 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 33.520 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 29.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 31.350 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.930 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.800 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 23.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 23.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 26.62 |
| Juven | Juvenile tuber | 24.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.53 | |
| Mother_Juven | Mother tuber of Juvenile | 28.39 |