Gene detail

Detail information of GWHGAAEX016869/evm.TU.scaffold_79.108

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672204220\|ref\|XP_008778854.1\|	0	PREDICTED: uncharacterized protein LOC103698601 [Phoenix dactylifera]
Swissprot	tr\|A0JJX5\|SYT4_ARATH	2.00E-07	Synaptotagmin-4
trEMBL	tr\|A0A096PJ76\|A0A096PJ76_MAIZE	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:AC200753.3_FGP003}
TAIR	AT5G17980	0	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000082	1998884	2001790	+

Transcript Sequence
>GWHTAAEX016869 ATGGCGGAAACGGCAAGGAAGCTCTTCGTCGAGGTCGTCGAAGCCCACGACCTCCTGCCCAAGGACGGCACAGGAACATCAAGCCCGTACGCCGTCGCCGACTTCGACGGCCAGCGGCGGCGGACGCAGACTGTCTGCCGCAATCTCAACCCCTCATGGAACGAGCTGCTCGAATTCAATTTGAACAGTTCCGCGGACTTCGCTGGAGATCCGCTGGAAGTTGACGTGCTGCACGACCGGCGTGTAGGCACCAGCCGGAGGAGCAACTTCCTTGGCCGCGTCCGGCTGGACTCCAGGCATTTTGTCAAGAAGGGAGAGGAGGCTCTCATCCATTTCCAGTTGGAGAAGAAGAGCTTCTTTAACTGGGTCCGGGGAGAGATAGGCCTCCGTATTTACTACGACGATGTGCCCATCGCTCCTCCGGCGCTGCCGGCGGAGGAAGTCGCAGAAAGCAACCCAGCAGATGTAGCCAAGTCACCGGAAGCGGAACAAACTGCTGCAGCCGAACCAATCGACGCCGCAAAATTAAAAACAGAAGAGCCATCGGAAACGGAAACAAATTCTATAGAAATATCCAAGCAAGAGACAGAGCCGACGGCCACCGAAACAGAGACGCAAGCTCTGGCCAAAACTCAAAAAGAAGCCGCTGTCACGGCGCTACCGCCAGCAGCAGCCGGGACCAAGGTGCTTCCGCAGCTGCCGGTGCCAGAGCAGATGGAGAAATCCTCCTACGACTTGGTGGACAAGATGCAGTACCTCTTCATCCGCGTGATTCGCGCCAGATCGCTCCCAAGCGAAGTCAAGCCACACGTGCGGGTTGCGTCCTACGGCCGCCAAGCGACCACCTGTACCGCCCGGCGATCAGCGTTCTTCGAATGGGACCAAACCTTCGCATTCGCCCGCGATCCGGCCTCCGGCGACACCTCAGCCTTAGAAATATCCGTGTGGGATCTTCCTCCGGAGGCCGTCGCCGGCGACGACGATCGATACTTCCTCGGCGGTGTCTGCTTTGACGTCTCTGAAGTTCCTGTACGAGATCCACCGGACGGGCCGCTGGCCCCGCAATGGTACCACCTAGAAGGAAGCGGAGCTCTCCGCGGCGGAGGCGATATTATGCTCGCAACGTGGGCCGGCACTCAAGCCGACGAGTCATTCCCCAACGCCTGGAAAGCCGACGCGTCTTCTTCCTCTCGCTCTAAAATATACCTCTCGCCCAAGCTTTGGTACCTGCGCGTCACCATTATCGAGGTGCAGGAAGGGCCAACGCCGCCGAGGGAGATCTCTCTCATCATTCGCGCGAGTTTAGGTTTCCAATCTTTGAAAACCCGCACCGCCTTCCCTCGCAATAACGGCGCGCTGGCTTGGAACGAAGACCTTCTTTTCGTCGCCGCAGAGCCATTCGGGGAGGACGATAGCCTCAGCCTCTATCTCGAATCGAGACAGGGGAAGGAGATCATCATCGTCGGCTCAGCTTCGATCCCTCTCTCCTCCGTCGAACGCCGCGTGGATGACCGCAAGGTCGCCTCCCGTTGGCTCGACCTCATACCACCAAGCGACGAACGGCGGATCTATGGGAGAAGATTGCACTTGCGTATCTGTCTGGATGGGGGTTACCACGTTCAGGATGAGCCACAGCACGCGCTTAGCGACAACCGGCCATCAGCGAGGCAGCTTTGGCGACCGGCGGTTGGATCAATAGAGATTGGATTAATTGGATGTCGAGGGTTGCTTCCGATGAAGGCCGTCGACGGGAAAGGCACCACCGACGCTTTTGCGGTCGCAAAATATGGTCCTAAATGGGCACGCACGCGAACGGTCATCGAATCCTTCGATCCGGCATGGAACGAGCAATTCACGTGGCCAGTCTTTGATCCCGCCACCGTGCTCACTGTCGCTGTCTTCGAAGAATCCGCATCCGGTTGCCGTCCGATGGGGCGGATTCGGATTCGGGTCTCCGCACTAGAAACGAATCGCGCCTACCGCTGCTTCTACCCGCTTCTCCTCCTCCTCCCCTCTGGACTGAAGCGGATAGGAGAAATCGAGATCGCCATGCGGTTCACAAGAACCGTGCCCCAAATCGACCTTCTTCACCTCTATTGGCAGCCGATCCTACCTGCGATGCATCACATTCGGCCGATCGGATCGCCGCAGCGGGAATCTCTGCGGATTGCGGCGGCTAAGGTTTCAGCAGCTCATCTGGCGAGAGCAGAGCCATCGCTGCGGCGAGAAGTGGTGATGTGGACGCTCGAGGCAGCGAATCCTCCGTACAGCATGCGGCGCGTGCGGTCGAGTTGGGGGAGAATCGCGGCAGCGATGGTTTGGGTTGGGGAAGGAACGCGGTGGGTCTCGGATTTAAAGGAATGGCGGAATCCTGCATCTACGTTGATGGCGCACGGGGTGGCGCTGCTTCTCGCGCTGTATCCGGATCTGATCGTTCCGGCGACGGCTCTGCAATTGGGACTGATAGCAATATGGAATTACCGGCGGCGACCTAGATCGCCGGCGTTGGGGGTAGCGGCGAGGGAATCAGGAGCGGAGGGAGCAGAGAGGGAGGATCTTGACGAGGAGTTCGACGCCGTGCCGAGCGCGAAGGGGGAGGAGATAGTGAGGGCAAGGTATGAGAGATTGAGGGCTGTGGGGAGTTATATACAGGCGATGCTTGGGGAAGCAGCGGAGCAGGCGGAGAGGGTTCAGGCGGTGGTGACGTGGAAGGATCCTTGGGCCACAGCAATGTTCGTCGGAGCGTGCTTTGTGGTGGCGCTGGTGATGTACGTGATGCCGGCCAGAATGGTGGCCGCGGCTGCCGCGTTTTATTATATGCGCCACCCGGTGTTTAGGGGAAGGATGCCGCTGCCAGCTGTCAATTTTTTCAGGAGGCTGCCGTCGTTTGCTGATCGGATGATTTAG

Network for GWHGAAEX016869

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00168.29	C2	7	104	3.70E-16
PF00168.29	C2	252	358	5.90E-05
PF00168.29	C2	408	514	0.00045
PF00168.29	C2	565	666	4.10E-17
PF08372.9	PRT_C	813	968	6.80E-55

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.860
SRP064423	SRR2545915	Juvenile tuber	6.810
SRP108465	SRR5643513	five period of Gastrodia elata	13.400
	SRR5643514	five period of Gastrodia elata	9.820
	SRR5643515	five period of Gastrodia elata	13.850
	SRR5643524	five period of Gastrodia elata	9.270
	SRR5643525	five period of Gastrodia elata	50.080
	SRR5643528	five period of Gastrodia elata	30.930
	SRR5643658	five period of Gastrodia elata	46.110
	SRR5643659	five period of Gastrodia elata	25.610
	SRR5643660	five period of Gastrodia elata	22.530
	SRR5643661	five period of Gastrodia elata	26.650
	SRR5643662	five period of Gastrodia elata	25.950
	SRR5643663	five period of Gastrodia elata	24.140
	SRR5643664	five period of Gastrodia elata	37.640
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	22.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.950
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	24.560
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.660
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	16.560
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	23.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	21.590
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.760
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.460
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.020
SRP279888	Gastro	Gastrodia elata tuber	26.22
	Juven	Juvenile tuber	15.83
	Mother_Gastro	Mother tuber of Gastrodia elata	11.52
	Mother_Juven	Mother tuber of Juvenile	9.30