Detail information of GWHGAAEX016870/evm.TU.scaffold_79.110
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|430741268|ref|YP_007200397.1| | 5.00E-144 | xanthine dehydrogenase, molybdopterin-binding subunit B [Singulisphaera acidiphila DSM 18658] |
| KOG | KOG0430 | 0 | Xanthine dehydrogenase |
| nr | gi|672193087|ref|XP_008775941.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: indole-3-acetaldehyde oxidase-like [Phoenix dactylifera] |
| Swissprot | tr|O23887|ALDO1_MAIZE | 0 | Indole-3-acetaldehyde oxidase |
| trEMBL | tr|F6HAB3|F6HAB3_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB49192.1} |
| TAIR | AT3G43600 | 0 | aldehyde oxidase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000082 | 2007094 | 2046157 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016870
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00111.26 | Fer2 | 16 | 83 | 1.30E-06 |
| PF01799.19 | Fer2_2 | 94 | 180 | 1.40E-23 |
| PF00941.20 | FAD_binding_5 | 259 | 430 | 2.10E-36 |
| PF03450.16 | CO_deh_flav_C | 458 | 563 | 1.50E-17 |
| PF01315.21 | Ald_Xan_dh_C | 634 | 743 | 1.50E-26 |
| PF02738.17 | Ald_Xan_dh_C2 | 772 | 1293 | 1.00E-157 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K09842 | AAO3 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Carotenoid biosynthesis | map00906 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0051536 | Molecular Function | iron-sulfur cluster binding |
| GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
| GO:0046872 | Molecular Function | metal ion binding |
| GO:0051537 | Molecular Function | 2 iron, 2 sulfur cluster binding |
| GO:0071949 | Molecular Function | FAD binding |
| GO:0009055 | Molecular Function | electron carrier activity |
| GO:0005506 | Molecular Function | iron ion binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.300 |
| SRR2545915 | Juvenile tuber | 6.480 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.280 |
| SRR5643514 | five period of Gastrodia elata | 3.980 | |
| SRR5643515 | five period of Gastrodia elata | 3.790 | |
| SRR5643524 | five period of Gastrodia elata | 3.250 | |
| SRR5643525 | five period of Gastrodia elata | 7.110 | |
| SRR5643528 | five period of Gastrodia elata | 4.880 | |
| SRR5643658 | five period of Gastrodia elata | 5.170 | |
| SRR5643659 | five period of Gastrodia elata | 8.260 | |
| SRR5643660 | five period of Gastrodia elata | 7.620 | |
| SRR5643661 | five period of Gastrodia elata | 6.370 | |
| SRR5643662 | five period of Gastrodia elata | 5.850 | |
| SRR5643663 | five period of Gastrodia elata | 6.970 | |
| SRR5643664 | five period of Gastrodia elata | 6.870 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.720 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.670 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.510 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.820 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.860 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.580 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.060 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.060 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.68 |
| Juven | Juvenile tuber | 17.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.83 | |
| Mother_Juven | Mother tuber of Juvenile | 9.87 |