Detail information of GWHGAAEX016874/evm.TU.scaffold_79.116
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0810 | 4.00E-137 | SNARE protein Syntaxin 1 and related proteins |
| nr | gi|743883221|ref|XP_010909353.1| | 1.06E-163 | PREDICTED: syntaxin-132-like [Elaeis guineensis] |
| Swissprot | tr|Q9SRV7|SY131_ARATH | 1.00E-137 | Putative syntaxin-131 |
| trEMBL | tr|M0TI55|M0TI55_MUSAM | 1.00E-155 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P16680_001} |
| TAIR | AT3G03800 | 4.00E-137 | syntaxin of plants 131 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000082 | 2085776 | 2097042 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016874
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00804.24 | Syntaxin | 37 | 242 | 5.60E-69 |
| PF05739.18 | SNARE | 244 | 295 | 1.10E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08486 | STX1B_2_3 | SNARE interactions in vesicular transport | map04130 |
| Synaptic vesicle cycle | map04721 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016192 | Biological Process | vesicle-mediated transport |
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0005484 | Molecular Function | SNAP receptor activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 76.260 |
| SRR2545915 | Juvenile tuber | 72.510 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 50.700 |
| SRR5643514 | five period of Gastrodia elata | 41.550 | |
| SRR5643515 | five period of Gastrodia elata | 50.100 | |
| SRR5643524 | five period of Gastrodia elata | 41.860 | |
| SRR5643525 | five period of Gastrodia elata | 66.340 | |
| SRR5643528 | five period of Gastrodia elata | 55.370 | |
| SRR5643658 | five period of Gastrodia elata | 59.630 | |
| SRR5643659 | five period of Gastrodia elata | 64.190 | |
| SRR5643660 | five period of Gastrodia elata | 70.650 | |
| SRR5643661 | five period of Gastrodia elata | 65.890 | |
| SRR5643662 | five period of Gastrodia elata | 55.430 | |
| SRR5643663 | five period of Gastrodia elata | 71.380 | |
| SRR5643664 | five period of Gastrodia elata | 65.680 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 58.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 42.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 45.900 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 80.110 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 70.070 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 76.010 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 54.860 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 58.600 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 41.400 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 39.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 39.610 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 39.610 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 89.38 |
| Juven | Juvenile tuber | 117.62 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 77.93 | |
| Mother_Juven | Mother tuber of Juvenile | 131.26 |