Gene detail

Detail information of GWHGAAEX016875/evm.TU.scaffold_79.117

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|347754987\|ref\|YP_004862551.1\|	1.00E-117	putative aminopeptidase [Candidatus Chloracidobacterium thermophilum B]
KOG	KOG2195	0	Transferrin receptor and related proteins containing the protease-associated (PA) domain
nr	gi\|743877935\|ref\|XP_010908056.1\|	0	PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9M1S8\|GCP2_ARATH	0	Probable glutamate carboxypeptidase 2
trEMBL	tr\|K4A6F3\|K4A6F3_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si034457m}
TAIR	AT3G54720	0	Peptidase M28 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000082	2098542	2115494	-

Transcript Sequence
>GWHTAAEX016875 CTTTTTATAGCCTTTTGCATTCAAAACCCAACTCCAAAAATGGCTCGACCTCCTTCAAATCCCTGGCTCTCTCACTCCCGCCTCCTCCTCGCCTTCCTCTCCACCTTCGTCATCGTCATCGTCCTCCTCTCTCTCCGCCCTTCCCCCGAACCCGCTTTCCAAATCACGCCTTTCCCTCCCCAAATCGCTGCCCGACGCCTTTTCATCACCCTTTCCGCCTCCGCAAACGCCTCCATCTCCTCTCACCTCCGCGCTCTCACCCTCCGACCTCACCTTGCCGGAACTCCCTCTGCCGCCGCTGCCGCCGCCTACGTCCGCACCCGCCTCGAGCTCTCCGGCCTCGATACCTTAACCCGCAACTATTCTGTCCTCCTTTCTTACCCCGCCGCTGCCTCCCTTTCCGTAATCCGCAACGGAACCCTAATCAAGGCTCTCTCCCTCACCGAGCCGGCGGATTCCGCCTCTCGCGCGGTCCCACCCTACCACAGCTACTCCCCATCCGGCTCTGTGATCGCCCCTGCTGTGTACGCGAATCTGGGCCGCGATGAAGATTATCTCACCCTTGATCTGCTTTCGGTCGACGTCCGTGGCTGCGTGGTGGTGGTGAGAAAGGGCGGCGGGGCTAGAGGAGCTGTTGTGGAGGCTGCAGGGGTTAGAGGGGCCAAGGCCGTGCTCATGTTTGGGAAAGGTGTTGGCGGAGGCGTGGAGAGGGGAACTGTCCTTCTATCCGGGCCCGGTGATCCGCTTACTCCGGGATGGGCTGCCAGCTCAAATGCAGAGAGATTGGGTTTGTGGGATGCGAAAGTGAGGAAGAGGTTTCCGAAGATACCATCAATGCCTATTCCGACTGCCACTGCAACTGAGATTCTGGGAGCAATTGGCGGCCCGTTGGCGCCTCCGGAATGGAAGGCCGACCTGCCGGCGGTGGTTCGTGTTGGCGGGGGATCTACGATGCTCAACTTTACTTATCAGGAAGACAGGAATTTGGCAGAGATCCATAACATTATTACCATCATAAAGGGGTGTGAGGAGCCTGACCGTTATGTTATCCTTGGCAACCACAGAGATGCATGGACCTATGGTGCTGTGGACCCCAACAGCGGAACAGCTGTTCTTCTTGATGTTGCCAGTCGTTTTGGCAATCTTCTACGTTCTGGATGGAAGCCAAAGAGGACTATCGTTATTTGCAGTTGGGATGCAGAGGAGTTTGGAATGATTGGGTCTACTGAGTGGGTGGAGCAGAACCTGGGAAATTTAGGTTCGCAGGCAGTAGTCTATCTAAATTTGGACTGTGCAGTACAAGGTGCAGGTTTCTTTGCTGGTGCAACTCCCCAACTGGACAGACTTCTGATGGAAATTATGAAACAGGTGAGAGACCCAGACTCTGAAGGCATGACTGTGTATCAAACTTGGGCAGCTAAAAATGGAGGAATCAGTGTTGAGAGGCTCGCTAGAGCTGATTCAGATTTCACTGCATTCTTGCATCATGCTGGAGTTCCTGCTACAGATATTTATTTTGGAGAAGACTATGCTTTCTATCATACAATTCTTGACACATATGACTGGATGGAGAAATATGGAGATCCATCATTTCGACGTCATGTTGCAATTTCCGAAATCTGGGGACTCTTAAGCCTCCGCCTCGCAGACGATCCCATATTGCCTTTTGATTATAACTCTTACGCCGGCCAATTACAGGAACACACAAATTCGCTTGCAACTCTGCTCAATGATTGGGAAACTGTGAACCCCATACGCCGCTCCATTGCGCAGTTTTCTGCTGCAGCCAAAGCAGCCCAGGAGGAAGCGAAAGGGTTCAAAGCGCAAGGCTTTGCAGATACTGCTGCTTCATGTCTAAGGCTAAGGGCTTTAAATGACAGGCTAATGCTCACAGAGAGGGCCTTTCTGGAACCAGAGGGCCTCTGCGGTCGACCCTTTTTTAAACATGTGCTGTACTCTCCTCCCAAGAGCACAGCCAGCAAGCTCTCATTCTTTCCCGGCATAGCCGACGCAATCTACGATGCCAGGAGCTCGACCAAGGATGGACGGTCGAAAATAGATCGCGAAATCTGGCGGGTTGCCAGAGCCATTCAAAGGGCCGCCAGCGTGCTCGGCAGCGAGCTCGCTTGACCGGAATCTGAAGCTGCGCAGCAGTGATTGCTGGAAGGGGCTGAGTCAGATTAAGTGTTTTGTTCCTGTGGTTTGTTTCATGTGGAATATAATATGTAGATTATTAATATTAATTAATTGTTAATATTTCGTTCAAATATAAAATAATATTGAAAAGCTTCGGAATATTCATCTGAATTTATCCAATTATATAAGTATATGAAATATCGG

Network for GWHGAAEX016875

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04389.16	Peptidase_M28	321	511	6.30E-23
PF04253.14	TFR_dimer	569	691	3.30E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.880
SRP064423	SRR2545915	Juvenile tuber	6.100
SRP108465	SRR5643513	five period of Gastrodia elata	6.810
	SRR5643514	five period of Gastrodia elata	6.780
	SRR5643515	five period of Gastrodia elata	6.660
	SRR5643524	five period of Gastrodia elata	6.840
	SRR5643525	five period of Gastrodia elata	8.620
	SRR5643528	five period of Gastrodia elata	6.870
	SRR5643658	five period of Gastrodia elata	6.620
	SRR5643659	five period of Gastrodia elata	6.800
	SRR5643660	five period of Gastrodia elata	7.450
	SRR5643661	five period of Gastrodia elata	7.410
	SRR5643662	five period of Gastrodia elata	5.810
	SRR5643663	five period of Gastrodia elata	4.550
	SRR5643664	five period of Gastrodia elata	5.820
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.030
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.160
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.610
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.070
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.100
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.280
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.550
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.670
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.660
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.970
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.260
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.260
SRP279888	Gastro	Gastrodia elata tuber	6.41
	Juven	Juvenile tuber	15.47
	Mother_Gastro	Mother tuber of Gastrodia elata	45.93
	Mother_Juven	Mother tuber of Juvenile	37.74