Gene detail

Detail information of GWHGAAEX016886/evm.TU.scaffold_79.128

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743886842\|ref\|XP_010910245.1\|	PREDICTED: uncharacterized protein LOC105036183 isoform X1 [Elaeis guineensis]
trEMBL	tr\|M0STP5\|M0STP5_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P31330_001}
TAIR	AT3G11760	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000082	2266671	2271839	+

Transcript Sequence
>GWHTAAEX016886 GAATAATCGCAATTCTTAGAAACATAGCTTTTCTCTTGGCGATAACATCGCCCACAACTTTTAGGCGTAAAAGCAGGGGTTTTTTCGTCTTTCTACAATTGATATCAATCTCCGGTTCCTTTAATGTATAGATAAAATGGCCCGACCGAGATTCAGATGACATCGAGACTAAAATTTCTCTTCTTCATTCCTCGATCTCTCTCGGATCACCGCCGGCAGCCGATCGGCATCTCCGGTGGTCGGAATCCGGAATCTCCGGCAAGACCTCGAAGAAATGCAGCTTCTCTTCCTGTTTTCGTGTCTGTAAGTTACCGATCAGCGGAAACTAGGGCAAAATGGTGGCAAAGATGATTCGCTGGCCGTGGCCGCCGATTATGCTCAAGAAGTTTGAGGTGAGGCTTATGGTGAGGCGTATGAAGGGTTTGATGCTGCCTCTATCGCATGGGGAACTGCCGGAGGGTTCGACTCTGATGACGGCGGAACTAAGGTGGAAGGGACCGAAGACGACAGCGCTGAGGTCACTGAGAAGGACAGTAAAGAGGAACTGTACGAAGGCCGAAGCCTTAAAGGTGGATAAAGGGGAGGTGGAGTGGAACGAGGAATTTGTGAGTGTAGTTGGCCTCACGGCGCATAAGGAGAACTCCTATAATCCATGGGAGATCGATATCGTCATTTTAAATGGTTTAAAGCAGGTGTCCAAGAACAAGACATCCGTGCTTGGAACAACATCTTTGAATCTTGCAGAATATGCATTTACCTATGGTGAAGAAGTTGAGTTAAATTTGCCATTATTGATAGCAAGTGCTGATACTGATCCTCGACCAACTCTTCATTTGACTCTCAAATTACTGTCAAGAACTTGTTTAGAATCACCCGATTCCGTACAGCGACCAGTGACATCAATTGTCTCTTCTCAAGGGACACCTGAAAAAGATGACATTTCTGCTCTGAAAGCTGGATTGAGAAAAGTAAAGATACTCACAGAGTTTGTATCGGCTCGTAAATCAAGGAAATCTTACCGCGAGGATGAAGGTAGTGATGGTAGGGGTTCTGCTGGGAGTGAAGATACTGATTACACTTATCCATTGGACACCGAATCCCTTGATGGCAATTTTGATGAACAACTTGAAGATGGAAAAAATGATGCTACCATTCGAAAGTCATTCAGTTACGGAACTTTGGCAAATGTAAACTATATTGATGGTGTGATTATATCTGGTATTGGAGAGTATGAAGATTTGGTTTACTACAGTCATCGGAGATCTGATGTTGGCTGTTCCCCAGGGGAGGAAGCTATGTTATCTACGCATGAGCATTCTGTTGTTCAGAGTAAAAAAAGCATTCTTCCCTGGAAGAAGAGAAAGCATAATATTAAACCTCTTAAGGGCAAAGGAGAGCCATTGCTGAAGAAGGATTATGGAGAAGAGGGAGGAGATGACATAGATTATGATCGACGCCAGCTATCCTCTGATGAATCTCTCTTTGGAATGGAGCGCAAGGCTTGTGATGATGGATCGGCTTATCATTCATCAACATCAGATTTTGGTGATGATAATTTTGCTGTAGGAAATTGGGAATCAAAAGAAGTCTTAAGTCGAGATGGGTGCATGAAGCTCTCCACCGAGGTATTCTTTGCTTCCATCGATCAGAGGAGTGAGCGAGCAGCTGGCCAGAGTGCGTGTACTGCTCTTGTTGCTGTCATTGCAGAGTGGTTCAAATTAAACCAGGATATTATGCCGATCAAATCCCAGTTTGATTGCTTAATTCGAGAAGGCTCCTTGGAGTGGAGGAATTTATGCAGGAACCAGACATACATGAATCAATTTCCTGACAAGCACTTTGATCTTGAGACAGTTCTTGAGTCAAAGATCAGGCATCTCTCTGTTGTACCCAGAAAGTCCTATGTTGGGTTCTTCCATCCAGAAGGATGCGAAGCGATCAGCGGCTTCGACTTCCTGCAAGGAGCCATGTCTTTTGATAGCATATGGGAGGAGATTGCTGGTTCTGAGTCTACTTGCTTGTATATTGTGAGCTGGAATGATCACTTTTTCGTTCTCAAGGTGGAGCAAGATGCATATTACATTATTGACACGCTCGGTGAGCGACTCTATGAGGGTTGTGATCAGGCTTACATACTGAAGTTCGATCAGCGGACAACGATTCACAGAATTCAGGGACAAAAGGAGAATAAAGCCAATTCCAAGGAAGGTCTTGGCGGAGAAGGTGAGAGAGTCATGGCCGCTGAAAAAGAGCTGCTTTGTAGGGGCAAGGAATCCTGCAAGGAATACATCAAGAGCTTCCTGGCTTCAATTCCTCTCAGGGAACTGCAGGCCGATATGAAGAAGGGACTTTTGCCCTCCGCTCCACTTCATCATCGCCTCCAGATCGAGTTCCATTACACCGAGGCGACAAATGACATGGAAAAATTCGCAGCGTTCCCATCGCTGCCATTTTTAGAGACTAATGGCCGAATACATTGGTCTCAAGAGCCTTTATCGATAACTGGATCAACTCTAACCCCGGCAGCTGTGGTAGTTGTATAG

Network for GWHGAAEX016886

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10358.8	NT-C2	49	157	2.70E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	58.520
SRP064423	SRR2545915	Juvenile tuber	57.210
SRP108465	SRR5643513	five period of Gastrodia elata	40.220
	SRR5643514	five period of Gastrodia elata	33.760
	SRR5643515	five period of Gastrodia elata	23.860
	SRR5643524	five period of Gastrodia elata	27.700
	SRR5643525	five period of Gastrodia elata	40.590
	SRR5643528	five period of Gastrodia elata	31.600
	SRR5643658	five period of Gastrodia elata	49.260
	SRR5643659	five period of Gastrodia elata	22.500
	SRR5643660	five period of Gastrodia elata	24.560
	SRR5643661	five period of Gastrodia elata	20.850
	SRR5643662	five period of Gastrodia elata	28.930
	SRR5643663	five period of Gastrodia elata	30.470
	SRR5643664	five period of Gastrodia elata	35.820
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	49.810
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	38.320
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.240
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	62.840
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	58.660
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	72.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	49.410
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	52.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	33.170
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	34.340
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	39.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	39.540
SRP279888	Gastro	Gastrodia elata tuber	44.05
	Juven	Juvenile tuber	55.79
	Mother_Gastro	Mother tuber of Gastrodia elata	36.73
	Mother_Juven	Mother tuber of Juvenile	73.05