Detail information of GWHGAAEX016887/evm.TU.scaffold_79.129


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|719975515|ref|XP_010247817.1|4.42E-41PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Nelumbo nucifera]
Swissprottr|Q9XI36|MBD10_ARATH5.00E-32Methyl-CpG-binding domain-containing protein 10
trEMBLtr|W1NE73|W1NE73_AMBTC2.00E-39Uncharacterized protein {ECO:0000313|EMBL:ERM93673.1}
TAIRAT1G153402.00E-31methyl-CPG-binding domain 10

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008222951932338392+
Transcript Sequence

Network for GWHGAAEX016887

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01429.18MBD19771.40E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms85.050
SRR2545915Juvenile tuber84.390
SRP108465SRR5643513five period of Gastrodia elata106.600
SRR5643514five period of Gastrodia elata85.230
SRR5643515five period of Gastrodia elata90.370
SRR5643524five period of Gastrodia elata92.600
SRR5643525five period of Gastrodia elata155.800
SRR5643528five period of Gastrodia elata138.490
SRR5643658five period of Gastrodia elata156.210
SRR5643659five period of Gastrodia elata84.560
SRR5643660five period of Gastrodia elata99.170
SRR5643661five period of Gastrodia elata93.000
SRR5643662five period of Gastrodia elata79.660
SRR5643663five period of Gastrodia elata78.270
SRR5643664five period of Gastrodia elata95.610
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_177.930
SRR6049655Rhizomagastrodiae_C368-T10_good_184.310
SRR6049656Rhizomagastrodiae_C368-T07_good_170.450
SRR6049657Rhizomagastrodiae_C368-T07_good_191.860
SRR6049658Rhizomagastrodiae_C368-T04_good_180.270
SRR6049659Rhizomagastrodiae_C368-T04_good_1101.540
SRR6049660Rhizomagastrodiae_C368-T01_good_178.450
SRR6049661Rhizomagastrodiae_C368-T04_good_179.080
SRR6049662Rhizomagastrodiae_C368-T01_good_165.220
SRR6049663Rhizomagastrodiae_C368-T01_good_171.950
SRR6049664Rhizomagastrodiae_C368-T10_good_178.860
SRR6049665Rhizomagastrodiae_C368-T10_good_178.860
SRP279888GastroGastrodia elata tuber 88.90
JuvenJuvenile tuber92.91
Mother_GastroMother tuber of Gastrodia elata 108.59
Mother_JuvenMother tuber of Juvenile 115.20