Detail information of GWHGAAEX016891/evm.TU.scaffold_79.133
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0810 | 1.00E-89 | SNARE protein Syntaxin 1 and related proteins |
| nr | gi|743761317|ref|XP_010941596.1| | 1.50E-103 | PREDICTED: syntaxin-121-like [Elaeis guineensis] |
| Swissprot | tr|O64791|SY124_ARATH | 3.00E-90 | Syntaxin-124 |
| trEMBL | tr|M0TBQ9|M0TBQ9_MUSAM | 2.00E-96 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P31140_001} |
| TAIR | AT1G61290 | 1.00E-89 | syntaxin of plants 124 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000082 | 2346180 | 2349039 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016891
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00804.24 | Syntaxin | 30 | 234 | 4.30E-53 |
| PF05739.18 | SNARE | 236 | 287 | 4.60E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08486 | STX1B_2_3 | SNARE interactions in vesicular transport | map04130 |
| Synaptic vesicle cycle | map04721 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016192 | Biological Process | vesicle-mediated transport |
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0005484 | Molecular Function | SNAP receptor activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.020 |
| SRR2545915 | Juvenile tuber | 2.670 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.360 |
| SRR5643514 | five period of Gastrodia elata | 10.180 | |
| SRR5643515 | five period of Gastrodia elata | 34.300 | |
| SRR5643524 | five period of Gastrodia elata | 17.860 | |
| SRR5643525 | five period of Gastrodia elata | 66.620 | |
| SRR5643528 | five period of Gastrodia elata | 255.950 | |
| SRR5643658 | five period of Gastrodia elata | 38.110 | |
| SRR5643659 | five period of Gastrodia elata | 21.850 | |
| SRR5643660 | five period of Gastrodia elata | 6.740 | |
| SRR5643661 | five period of Gastrodia elata | 10.750 | |
| SRR5643662 | five period of Gastrodia elata | 25.210 | |
| SRR5643663 | five period of Gastrodia elata | 11.890 | |
| SRR5643664 | five period of Gastrodia elata | 83.240 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.360 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 24.360 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.950 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.090 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.760 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.310 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 23.130 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.180 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.830 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.890 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.890 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.20 |
| Juven | Juvenile tuber | 4.26 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 418.48 | |
| Mother_Juven | Mother tuber of Juvenile | 395.22 |