Gene detail

Detail information of GWHGAAEX016894/evm.TU.scaffold_79.136

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2167	Cullins
nr	gi\|743761247\|ref\|XP_010941311.1\|	PREDICTED: LOW QUALITY PROTEIN: cullin-4-like [Elaeis guineensis]
Swissprot	tr\|Q8LGH4\|CUL4_ARATH	Cullin-4
trEMBL	tr\|M0SR97\|M0SR97_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P22850_001}
TAIR	AT5G46210	cullin4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000082	2368398	2409091	-

Transcript Sequence
>GWHTAAEX016894 AATAAAAATAAATAAATAAATAAACTCATCCTAATCGATTATCTCTCCGATCCCCTCCACTCGCCCTCACCTCGCTCTCAGTCCTGCGCGCTTTACCCTCGATCTCCGCCGCCGTCCCTCACCGTTGTCCCTCCTCCGGCATATCCTCCGATCGCGCCTCCTGCCTCTCTCCACGCGATGCCCCTTCTTAATTGATTGATGACTCACGCAAAGAGGTCATTCTCAAACACAAGCAGCCGCTGCACCTCCAGTCCCGGCGGAGTTCTCGGAAGCACCTTATCTCCTTCCGCGGTCGCCTCTTCGTCGATGAAAAAGGCGAAGCCCCAACAGGCAGCTACAGCAACCGAGAGAGAGAAGAACGGCCTCCATGCTCAATCGATGGCGGTGGTTGATGAGGAGGAGAATATGCTTGTTGACCAAGAAGAGCTAAAGGATGGCGGCGCGTCTGCAGTAGCCATTGCCACCACTGGCGTGGCCTCCAATCTTTCTAGGAAGAAGGCCATTCCTCCTCAGCCCTCGTCGAAAAAGCAGCTTGTCATCAAACTCGTCAAGGGAAAACCAACCTTGCCAGCTAACTTTGAGGAAAATACATGGGCAACTTTGAAATCTGCTATTACAGCTATATTTCTAAAGCAGCCAGATCCCTGTGATTCTGAAAAACTTTATCAGGCAGTTAGTGATCTTTGTTTGCACAAGATGGGTGGAAATCTTTATCAACGTATCCAGCAGGAATGTGATGGGCACATTTCTGCCAAACTGCAGTCATTAGTTGGTCAAAGCCTTGATCCTGTGGTGTTTTTGTCATTAGTAGAAAAAAGCTGGCAGGACTTCTGTGACCAGATGCTGATGATTCGCGGTATTGCTCTATATCTTGATAGAACACATGTTAAGCAAACTCCAAATGTTCGCTCTTTATGGGACATGGGGTTGCAGTTATTTCGCAGACATTTGTCATTATCTCCAGAAGTTGAGCGCAAAATTGTTGCTGGCCTTCTAGAACTGATTGAGAGAGAACGACTAGGTGAAGCTATTAATAAGACAGTGCTTGGTCATCTTTTGAAGATGTTTACTGCTTTGGGAACCTATGCAGAAATTTTTGAGAAACCCTTCCTTGAAAGTACTTCCGACTTCTATGCTTCTGAAGGTGTTAAATACATGCAACAATCGGATGTTCCAGACTATTTGAAACAAGTGGAGCTGAGGTTACATGAAGAGCATGAGAGGTGCGTGCTCTACTTGGATGCAATTACAAGGAAGCCACTCGTTTCTACCACTGAAAAACAACTTCTTGAGCGACATACATCTGCCATTCTTGACAAGGGGTTCACGATGCTCATGGATGCTAAGCGTGTTGATGATCTTAAAAGGCTGTATACCCTTTTCTTGAGGGTGGATGCTCTTGAGGTGCTAAGGCAGGCTTTAGGATCATACATTAAGGGCACAGGGCAGAGCATTATTATGGATGAGGAAAAGGACAAAGATTTGGTTCCGTGTCTCTTGGATTTCAAAGCATGTCTTGATACAATATTGGAAGAAAGTTTTTCTAGAAATGAAGCTTTTTCAAATACCATAAAAGATTCGTTTGAACATCTAATAAATCTTCGTCAGAATCGACCTGCAGAACTGATTGCAAAGTTCTTGGATGATAAGCTGCGGGCTGGCAACAAGGGTACTTCTGAAGAAGAGTTGGAGGGCACTCTTGATAGAGTTTTGGTCTTATTCAGGTTTATACAAGGTAAAGATGTTTTTGAAGCATTTTATAAGAAAGATCTTGCAAAAAGGCTTTTACTTGGAAAGAGCGCGTCAATTGATGCTGAGAAGTCAATGATATCAAAACTGAAGACTGAGTGTGGGAGCCAATTTACTAATAAACTAGAGGGGATGTTTAAGGATATTGAATTATCAAAGGAAATAAATGACTCTTTCAAGCAATCATCCCAAGCCAGAACTAAACTTCCAAGCGGTATTGAGATGAGTGTTCATGTCTTAACAACCGGTTACTGGCCAACATATCCACCAATGGATGTTCGACTTCCTCATGAACTCAATGTTTACCAGGATATATTCAAGGAGTTCTACCTGAGCAAATACAGTGGAAGACGCTTGATGTGGCAAAATTCATTAGGCCATTGTGTTTTAAAAGCTGAATTTCCTAAAGGTAAAAAGGAGCTGGCTGTATCTTTGTTCCAGACTGTAGTTTTGATGATCTTCAATGCTTCCCAAAAGCTTTCTTTTCAAGATATTAAAGATTCTACTGGTATTGAAGATAAAGAACTCAGAAGAACCTTGCAATCCCTTGCTTGCGGCAAGGTTCGAGTTCTTCAAAAGATACCTAAAGGAAGAGAAGTAGAGGATGAAGACTTGTTTGTATTCAATGATGAATTCAATGCACCATTGTATCGCATAAAGGTAAATGCAATTCAAATGAAGGAAACAGTTGAAGAAAATACAAGCACCACAGAGCGTGTTTTCCAGGACCGTCAATATCAGGTTGATGCAGCTATTGTTCGAATCATGAAGACAAGAAAAGTACTTAGCCACACACTCCTAATAACAGAACTCTTCCAACAGCTGAAATTCCCAATAAAACCAGTCGATTTGAAGAAGAGAATAGAGAGCCTAATTGACAGGGAATATCTTGAGCGAGACAAGAATAATCCCCAGATTTACAACTACTTGGCTTGATACTCTCTCTTTCTTTCTCCTGTACAGAGATAACAGATCTTCCCTTTCTTTTTCTTTTCTTTATTTTTTTCTTTATTTTTTTTTTTCTGAGAAACATTAAATAGGTCACTTCTTTCAAATTTTATGCCTTTTCTTCTGAAATGAAAAAAAAAAGATCTGCAGTAACGTTAGTGTTATTTTGCCTTATTTAAGTAATGTTTTTATGCTGACAAATTATCGGCATTGGAATTCAATATCTGGTCTATGGCTTTTGCTGGAGCTTCTTTCTGATATTTGTATGTGTATATTTTTATACTGTATATAGTGCTTGAATTACCTCATCAGAAAGTGTCATTATTATTGTTTATTATTAATGTATAAATTTATTTGACT

Network for GWHGAAEX016894

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00888.21	Cullin	132	729	1.60E-204
PF10557.8	Cullin_Nedd8	760	820	1.10E-22

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	Cullin

KEGG pathway

KO	Enzyme	pathway	mapID
K10609	CUL4	Ubiquitin mediated proteolysis	map04120
K10609	CUL4	Nucleotide excision repair	map03420

Gene Ontology

GO term	Ontology	Name
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process
GO:0031625	Molecular Function	ubiquitin protein ligase binding
GO:0031461	Cellular Component	cullin-RING ubiquitin ligase complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	57.070
SRP064423	SRR2545915	Juvenile tuber	54.420
SRP108465	SRR5643513	five period of Gastrodia elata	31.640
	SRR5643514	five period of Gastrodia elata	32.600
	SRR5643515	five period of Gastrodia elata	30.320
	SRR5643524	five period of Gastrodia elata	31.710
	SRR5643525	five period of Gastrodia elata	21.810
	SRR5643528	five period of Gastrodia elata	19.660
	SRR5643658	five period of Gastrodia elata	27.400
	SRR5643659	five period of Gastrodia elata	31.690
	SRR5643660	five period of Gastrodia elata	33.080
	SRR5643661	five period of Gastrodia elata	31.900
	SRR5643662	five period of Gastrodia elata	30.010
	SRR5643663	five period of Gastrodia elata	29.520
	SRR5643664	five period of Gastrodia elata	34.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	46.520
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	34.560
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	42.540
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	55.600
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	67.020
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	73.150
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	59.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	53.270
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	41.430
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	49.390
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	36.960
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	36.960
SRP279888	Gastro	Gastrodia elata tuber	40.42
	Juven	Juvenile tuber	59.34
	Mother_Gastro	Mother tuber of Gastrodia elata	37.33
	Mother_Juven	Mother tuber of Juvenile	46.68