Gene detail

Detail information of GWHGAAEX016897/evm.TU.scaffold_79.140

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|186683149\|ref\|YP_001866345.1\|	3.00E-93	carotenoid oxygenase [Nostoc punctiforme PCC 73102]
KOG	KOG1285	0	Beta, beta-carotene 15,15'-dioxygenase and related enzymes
nr	gi\|672128631\|ref\|XP_008787808.1\|	0	PREDICTED: 9-cis-epoxycarotenoid dioxygenase, chloroplastic-like [Phoenix dactylifera]
Swissprot	tr\|O24592\|NCED1_MAIZE	0	9-cis-epoxycarotenoid dioxygenase 1, chloroplastic (Precursor)
trEMBL	tr\|M9T2Z4\|M9T2Z4_NARTA	0	9-cis-epoxycarotenoid dioxygenase {ECO:0000313\|EMBL:AGI98130.1}
TAIR	AT1G78390	0	nine-cis-epoxycarotenoid dioxygenase 9

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000082	2559891	2562260	-

Transcript Sequence
>GWHTAAEX016897 TGAATTTTTTTGAACGATTAACTCAGTGTCTAAATAACTAATCGCCGCACTCACGCTCCCATTATTATATAAGTCTTTCAATTCCTCCCCCCAAACTCCCGACTCGATTCGACCTTTCGAAACGAGTAAATAACGGAACTCCTCAGGGAAAACAGAGCAGAGGGATGTCCATTTCCGTTCCCCTGCCGACCTATCTGAACCCGCCGCCAGATCCCAACCGTCGAAGATCCTCCGCCGTCCATTCAATCCTCCCTCCGGCCTTGCGGAATCGGTCGCCTGCGAAAGGGCCAGGGTGGAGCCCGCTGCAGCGGGTGGCGGCGGCCACGCTGGACGCGGTGGAGCAGCGGTTCATCGCAGAGTTTCTGGAAGGGGGGCAGGCGCTTCCGAGGGCGGCGGACCCTTCCATTCAAATTGCGGGGAACTTCGCTCCGGTGGGGGAGATGGCGCCGTCCGGGGAGCTGGCGGTGGAGGGGACGATCCCTCGGCACCTGGACGGGGTGTACTTGCGGAACGGGGCGAACCCGTTCTTCGCGCCTCAGGCAGGGCACCACCTCTTCGACGGGGACGGGATGGTACACGCGGTGCGGTTCCGGGACGGGCGGGTGTCGTACGCGTGCCGGTTCACGGAGACGGAGCGGCTGCGGCAGGAACGGGCGGCTGGACGGGCGCTATTCCCGAAGGCGATCGGGGAGCTGCACGGGCACTCGGGGATCGCCCGGCTCCTGCTTTTCTACGCTCGGGGGATGGTCGGGGTGGTGGACCCGTCGCGCGGGGTTGGGAGCTCAAACGCCGGGCTGGTATTCTTCGGGGGGCGGCTGCTGGCCATGTCTGAGGACGACCTGCCGTACCACTTGCGGGTGACGGGGAGCGGGGATCTGGAGACGGTGGGGAGGCACGATTTCGGCGGGCAGATGAAGGGGGCGCGGTCGATGACGGCGCACCCGAAGATCGACCCGGCGACGGGGGAGATGTTCGCACTGAGCTACGACGTCGTGAGGCGGCCGTACCTGAGGTATTTCCGATTCTCGCCGTCGGGGGAGAAGTCAGCGGACGTGGCGATAGAGCTGGCCCAGCCGACGATGGCGCACGACTTCGCTATCACGGAGAATTACGTGTTGGTGCCGGACCAGCAGGTCGTGTTTGACCTGGGGGAGATGGTTGGAGGGGGATCGCCGGTGGTGTTCGACGAGAGGAAGAAGGCCAGGTTTGGGGTTCTGCCGAAGGGGGCGGCGGACGGGTCTGGCATCAGGTGGGTGGAGGTTCCCGACTGCTTCTGCTTCCATTTCTGGAATGCGTGGGAAGAGGCGGGAGGAGATGAGGTCGTCGTTATCGGATCCTGTATGACCCCGGCGGATTCCATCTTTAACGGGTCGGATGAGAGGCTTCGGAGCGAGCTCACCGAGATCCGCCTCGATTTGCGGGCGGGCACGGCGACCCGGCGGGCCGTCATCGGGTCTGCGGGTCATGTGAATCTGGAGGTGGGGATGGTGAACCGGAACCGGCTAGGCCGTCCGACGCGCTACGCTTACCTGGCGATAGCCGAGCCGTGGCCCAGAGTGAGGGGATTCGCCAAGGTGGATCTGGTCACCGGGGAGATGCGCCAATTTCTGTACGGAGAGGGGAGGTACGGCGGCGAGCCGTGCTTTGTCCCTGCGCCGGCTCCGGCGGAGGAGGATGACGGGTATGTGATAGCCTTCGTGCACGACGAGGCTTCGGGGATTTCAGAGGTGAAGATAATGAATGCGGTGGACTTAAAGGTGCAGGCCGCGGTGCGGTTACCGTCCCGGGTGCCTTACGGTTTCCACGGTACGTTCGTCTGCGAGGAGAGCCTTCAGTCTCAGGTCTGACTGAGTGATTCAGCAGGGTTCCTTTAATATTGGAAGCTGCCTGAGGGATTGCCACAGAGATCGATCCCCGGGGCTTTCCTTTTTTACTTGTCTTGTCATATATGTCAGATATGTCATATATGTGTAGTGAGTGTGAGTACAATAGATAAGCGAGGCCAGCTTGCAGCGCATGTAGGATTGAGAGCTCAGCGGGTCTCATTTGTATAATACTTAGCCTGTGCTGTAAATATGTTTGTGTATGTTTTTCTTTGGTACAGTCGAGAGGCCTTTTTGTTTAGTTATCTTTTGGGTAAATATTATAAGCTTTTATATTTATAGAAATAACTGTCTTCCGTTCCATATGTAAGGCTTGTTAAGTGGAATTTGTGTTTGTAAGATAGAATAGGATGAGTAGCCGATGGAAATAGGTTACACACATAATTAGGCACTCTGACTCACTTTCTAGAATCTAATGTTTTGTCCACACAGTAAATGTTTGTGTAAGTTTGATTTTTCTCTCTTCCTTAATCACAATGGTATCTAC

Network for GWHGAAEX016897

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03055.14	RPE65	88	551	2.70E-107

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09840	NCED	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0016702	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.210
SRP064423	SRR2545915	Juvenile tuber	5.010
SRP108465	SRR5643513	five period of Gastrodia elata	3.680
	SRR5643514	five period of Gastrodia elata	4.300
	SRR5643515	five period of Gastrodia elata	9.700
	SRR5643524	five period of Gastrodia elata	4.070
	SRR5643525	five period of Gastrodia elata	21.080
	SRR5643528	five period of Gastrodia elata	12.000
	SRR5643658	five period of Gastrodia elata	30.870
	SRR5643659	five period of Gastrodia elata	20.030
	SRR5643660	five period of Gastrodia elata	6.970
	SRR5643661	five period of Gastrodia elata	33.420
	SRR5643662	five period of Gastrodia elata	34.540
	SRR5643663	five period of Gastrodia elata	12.010
	SRR5643664	five period of Gastrodia elata	48.950
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.720
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.270
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.020
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.490
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.450
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.460
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.540
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.290
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.630
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.630
SRP279888	Gastro	Gastrodia elata tuber	5.70
	Juven	Juvenile tuber	3.59
	Mother_Gastro	Mother tuber of Gastrodia elata	7.58
	Mother_Juven	Mother tuber of Juvenile	3.68