Detail information of GWHGAAEX016900/evm.TU.scaffold_79.144
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|113476028|ref|YP_722089.1| | 2.00E-121 | FMN-dependent alpha-hydroxy acid dehydrogenase [Trichodesmium erythraeum IMS101] |
| KOG | KOG0538 | 0 | Glycolate oxidase |
| nr | gi|694327997|ref|XP_009354832.1| | 0 | PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase-like isoform X1 [Pyrus x bretschneideri] |
| Swissprot | tr|O49506|GLO5_ARATH | 0 | Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 |
| trEMBL | tr|A5B1R1|A5B1R1_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN67413.1} |
| TAIR | AT4G18360 | 0 | Aldolase-type TIM barrel family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000082 | 2706277 | 2737268 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016900
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01070.17 | FMN_dh | 13 | 356 | 5.60E-136 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0010181 | Molecular Function | FMN binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 106.720 |
| SRR2545915 | Juvenile tuber | 59.970 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 58.590 |
| SRR5643514 | five period of Gastrodia elata | 51.600 | |
| SRR5643515 | five period of Gastrodia elata | 60.030 | |
| SRR5643524 | five period of Gastrodia elata | 57.480 | |
| SRR5643525 | five period of Gastrodia elata | 74.170 | |
| SRR5643528 | five period of Gastrodia elata | 67.070 | |
| SRR5643658 | five period of Gastrodia elata | 69.400 | |
| SRR5643659 | five period of Gastrodia elata | 23.850 | |
| SRR5643660 | five period of Gastrodia elata | 45.290 | |
| SRR5643661 | five period of Gastrodia elata | 37.050 | |
| SRR5643662 | five period of Gastrodia elata | 15.080 | |
| SRR5643663 | five period of Gastrodia elata | 16.220 | |
| SRR5643664 | five period of Gastrodia elata | 18.480 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 72.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 41.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 67.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 81.420 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 84.220 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 102.880 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 84.900 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 77.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 74.580 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 86.990 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 66.230 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 66.230 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 53.04 |
| Juven | Juvenile tuber | 61.11 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 108.96 | |
| Mother_Juven | Mother tuber of Juvenile | 96.98 |