Detail information of GWHGAAEX016909/evm.TU.scaffold_79.155
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|271967988|ref|YP_003342184.1| | 7.00E-84 | amino acid transporter [Streptosporangium roseum DSM 43021] |
| KOG | KOG1286 | 0 | Amino acid transporters |
| nr | gi|672123069|ref|XP_008784883.1| | 0 | PREDICTED: cationic amino acid transporter 1-like, partial [Phoenix dactylifera] |
| Swissprot | tr|Q84MA5|CAAT1_ARATH | 0 | Cationic amino acid transporter 1 |
| trEMBL | tr|J3NEX7|J3NEX7_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB12G25350.1} |
| TAIR | AT4G21120 | 0 | amino acid transporter 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000082 | 2911203 | 2914919 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016909
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13520.5 | AA_permease_2 | 62 | 466 | 1.00E-41 |
| PF13906.5 | AA_permease_C | 503 | 553 | 1.20E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.220 |
| SRR2545915 | Juvenile tuber | 5.890 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.570 |
| SRR5643514 | five period of Gastrodia elata | 23.560 | |
| SRR5643515 | five period of Gastrodia elata | 40.270 | |
| SRR5643524 | five period of Gastrodia elata | 44.030 | |
| SRR5643525 | five period of Gastrodia elata | 126.580 | |
| SRR5643528 | five period of Gastrodia elata | 167.740 | |
| SRR5643658 | five period of Gastrodia elata | 89.960 | |
| SRR5643659 | five period of Gastrodia elata | 30.410 | |
| SRR5643660 | five period of Gastrodia elata | 16.870 | |
| SRR5643661 | five period of Gastrodia elata | 44.630 | |
| SRR5643662 | five period of Gastrodia elata | 42.240 | |
| SRR5643663 | five period of Gastrodia elata | 40.660 | |
| SRR5643664 | five period of Gastrodia elata | 32.180 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.940 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.820 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.890 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.800 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.180 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.390 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.900 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.990 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 22.37 |
| Juven | Juvenile tuber | 5.88 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 109.61 | |
| Mother_Juven | Mother tuber of Juvenile | 36.38 |