Gene detail

Detail information of GWHGAAEX016910/evm.TU.scaffold_79.156

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743867885\|ref\|XP_010905421.1\|	PREDICTED: homeobox-leucine zipper protein HOX32-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q6AST1\|HOX32_ORYSJ	Homeobox-leucine zipper protein HOX32
trEMBL	tr\|I0IUI4\|I0IUI4_9ASPA	Class III homeobox-leucine zipper protein {ECO:0000313\|EMBL:BAM08933.1}
TAIR	AT2G34710	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000082	2917791	2931841	+

Transcript Sequence
>GWHTAAEX016910 TCGCACGGAGCAAGCTTCAGGTTTGCAGGAGATAGCGGGAATCCGAACTCGGCGATGCTGGAAAGGCGCTGTTGTCTCGATTCTGTAGTCGCAGCAGAATAACCTAAAGAAAGCAAAGAAGCGAGGCCTCGCCATTTTAGGGTTTCTTCCTTCAGAGTCGTTGCAGATGGCGATGATGGTTAGCAGCAAGGATGGCTCGAAGCAGATATTGGAATCAGGGAAGTATGTGAGATACACTCCGGAGCAGGTGGATGCGCTTGAGAGGGTTTATAATGAGTGTCCCAAGCCAAGTTCCTTGAGAAGGCAGCAGCTCATCAGGGACTGCCCCATACTCTCCAAAATCGAGCCGAAGCAGATCAAAGTTTGGTTTCAGAACCGAAGGTGCCGAGAAAAACAAAAGAAAGAAGCTGCTCGTCTACAGACCGTTAACAGAAAGCTTACTTCCATGAACAAGCTTCTGATGGAGGAGAATGATCGGTTGCAGAAACAGGTTTCACAGCTAGTTTACGAGAATGCCTTCATGCACCAGCAACTTCAAAATTCATCAATGGCTCTTACTGATGCAAATTGTGAATCTTTGACTTCAAGTGGTCAGCAGACATCTCAGCCCCTCCTGAAAGACGCTAACAACACAGATAGTTTATTTGCAATTGCTGAGGAAACATTGACAGAGTTTCTGAAAAAAGCCACAGGAACTGCCATCAATTGGGTTCAGTTGGTCGGGATGAAGCCTGGTCCGGATTCTATTGAAATCATCACTGTTTCCCGCAATTGTAGTGGTTTAGCAGCACGAGCATGTGGCCTTGTGAGTTTAGATCCCCAAAAGGTTGCGGATATTTTGAAAGATCGTCTAACTTGGTATCGAGACTGCCGATCTCTTGATGTGTTGACAGCTTTTCCTACTGCAAAGGGTGGACATATTGAACTTATATATATGCAGACATATGCACCTACTACTTTGGCTTCTGCTCGTGATTTTTGGACGCTTAGATACAGCACATCTTTGGAAGATGGCAGTATTGTGATATGCGAGAGGTCGTTGACTTCAACCGGTGGTCTAGCTGGACCAACCAACTCTAATTTTATTAGAGCTGAGATGCTTCCCAGTGGATATTTAATCCGTCCGTGCGAGGGTGGTGGTGCAATGATTCACATTGTTGATCATATTGATTTGGATGCTTCAAGTGTGCCTGAGGTTCTTCGGCCTTTGTACGAGTCACCAAAAATACTTGCTCAGAAGATGACCATTGCAGCATTGCACCATATTAGACAGATAGACTGTGAAACTAGCGAAATTTTTTATGACAGGGCACGTCCACCTTCTGTTTTGAGGGCCTTCAGCCAGAGGTTGAGCAGGGGTTTTAATGATGCCATTAATGGATTTTCTGATGATGGTTGGTCTTTACTGGGATGCGATGGTGTAGATGATGTTACTATAAATGTCAATTCATCTCTTGACAAAGTATTTGGAAGTCATTCCAGATTTTCAATGTTTTCTTCTTTGGACGGAGGCATTGTGTGTGCAAAGGCATCCATGCTACTTCAGAATGTGCCACCTGCATTAGTTGTTCGTTTTTTGAGGGAGCATCGTTCAGAGTGGGCTGACTCTGTTGTTGATGCTTATTCAGTGACATCATTGAGTGGTAGTCCATTTGCAATTCCTGGTTTTAGTGGAAATGGTGGCTTTGTGGGTAACTATGTATTTGTCCCTCTTGCTCATACTTTGGAAAATGAAGAGTTCTTAGAAGTGTTAAGGTTGGAAAGTCATGCCACTAACCAGGATGATGTTCTTTCCAGGGACATGTATTTGTTACAGCTGTGTGAAGGTATTGATGAGAATGCTGTTGGTGCTTGTGCGCAGCTTATTTTTTCGCCCATAGACCAATCTTGTGCCGATGATGCTCTTTTGTTACCTTCAGGATTTCGAGTGATACCACTTGATCTCAATGCAGGATCAACCGGTGCCACAAGGACTCTTGACTTGGCCTCCTCTTTAGAGGCTGGTTCAAGCGGATCAAGTCAAGTAGCCAATGATAAGGCTACTTGTGATATGCGGTCCGTTCTCACGATGGCATTCCAGTTTATATTTGAGTGCCACCTCCAAGAAAGTGTTGTGGCAATGGCTAGGCAATATATCCGAAGCATACTGGCTTCAGTGCAAAGGGTTGCAATGGCAATTGCTTCATCACAACTCGGCATAGAGCCAAGTATGAAACATTCACTTGGGTCTCCTGAAGCTCATACGCTAGCAAAATGGATTTCTAGCAGCTACAGGTCCCACACAGGAGTTGAGCTCATTAGAACCAGTTCTCAATGTGGTGATTCTCTGCTGAAGCTTTTGTGGCACCATTCGGATGCAATCATCTGCTGTTCTATCCAGGCTTCTCCCTCACTAACCTTTGCAAATCAAGCCGGCCTCGACATGCTGGAGACAACCCTAGTCGCTCTGCAAGACATTGCGCTAGAAAAGTTTCTCGACGATGCCGGTCGGAAGGCGCTCTCGTCCGAATTTCCCAGGCTGATGCAGCAGGGTTTCGCTCGTCTTCCTGGGGGGATCTGCATGTCGAGTACTGGTCGGCCGGCTTCTTATGAGCAGGCTGTGGCTTGGAAAGTTCTCGATGAGTCCAGCAGCGATTACCACTGCCTGGCGTTCATGTTTGTCTGCTGGTCATTTGTTTGAAAAACTTGGGGGGATCTGTATATATAACTCAGGGGTTCAGTTTTCTAAATGTACATAAAATGCTTTTAGGCTATTTGTTGCCCTATATATTGTTTTGATAGTTTGCTAATTGGGCAAGTTTTTCCTTGATTTTAAAGATGAAATGCAACTGTCCTGCTGGATTCTTTTTTCTTTTAGCTTAAAAAATTATGAAGCAAATATGTGATCGGTAATATTTGAATACAATGTTAGGGGATCATCAACTATAACAACATTCATTATTGTTGGAAAATTCTATGCCATATAGCCTTGG

Network for GWHGAAEX016910

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.28	Homeobox	20	77	1.90E-15
PF01852.18	START	162	368	2.30E-46
PF08670.10	MEKHLA	693	836	2.10E-47

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008289	Molecular Function	lipid binding
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.710
SRP064423	SRR2545915	Juvenile tuber	15.530
SRP108465	SRR5643513	five period of Gastrodia elata	10.190
	SRR5643514	five period of Gastrodia elata	17.510
	SRR5643515	five period of Gastrodia elata	12.560
	SRR5643524	five period of Gastrodia elata	15.870
	SRR5643525	five period of Gastrodia elata	15.160
	SRR5643528	five period of Gastrodia elata	19.350
	SRR5643658	five period of Gastrodia elata	17.550
	SRR5643659	five period of Gastrodia elata	24.090
	SRR5643660	five period of Gastrodia elata	25.880
	SRR5643661	five period of Gastrodia elata	24.240
	SRR5643662	five period of Gastrodia elata	24.320
	SRR5643663	five period of Gastrodia elata	30.790
	SRR5643664	five period of Gastrodia elata	29.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.800
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.130
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.290
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.300
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.480
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.760
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.550
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.980
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.490
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.370
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.870
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.870
SRP279888	Gastro	Gastrodia elata tuber	28.58
	Juven	Juvenile tuber	17.78
	Mother_Gastro	Mother tuber of Gastrodia elata	14.30
	Mother_Juven	Mother tuber of Juvenile	14.43