Detail information of GWHGAAEX016911/evm.TU.scaffold_79.157
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146298365|ref|YP_001192956.1| | 5.00E-27 | two component regulator [Flavobacterium johnsoniae UW101] |
| nr | gi|672169377|ref|XP_008804717.1| | 0 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940 [Phoenix dactylifera] |
| Swissprot | tr|C0LGQ9|Y4294_ARATH | 0 | Probable LRR receptor-like serine/threonine-protein kinase At4g20940 |
| trEMBL | tr|I1Q812|I1Q812_ORYGL | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA07G0025400.1} |
| TAIR | AT4G20940 | 0 | Leucine-rich receptor-like protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000082 | 2934608 | 2939136 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016911
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 34 | 79 | 2.00E-08 |
| PF00560.32 | LRR_1 | 179 | 201 | 0.062 |
| PF13516.5 | LRR_6 | 374 | 390 | 0.073 |
| PF13516.5 | LRR_6 | 469 | 482 | 1.6 |
| PF00560.32 | LRR_1 | 519 | 541 | 0.64 |
| PF07714.16 | Pkinase_Tyr | 799 | 997 | 2.80E-25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-III |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.460 |
| SRR2545915 | Juvenile tuber | 4.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.850 |
| SRR5643514 | five period of Gastrodia elata | 4.920 | |
| SRR5643515 | five period of Gastrodia elata | 3.820 | |
| SRR5643524 | five period of Gastrodia elata | 4.700 | |
| SRR5643525 | five period of Gastrodia elata | 4.000 | |
| SRR5643528 | five period of Gastrodia elata | 1.980 | |
| SRR5643658 | five period of Gastrodia elata | 1.890 | |
| SRR5643659 | five period of Gastrodia elata | 8.280 | |
| SRR5643660 | five period of Gastrodia elata | 9.030 | |
| SRR5643661 | five period of Gastrodia elata | 7.860 | |
| SRR5643662 | five period of Gastrodia elata | 7.140 | |
| SRR5643663 | five period of Gastrodia elata | 6.400 | |
| SRR5643664 | five period of Gastrodia elata | 5.660 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.950 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.100 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.010 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.210 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.340 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.020 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.530 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.990 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.990 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.92 |
| Juven | Juvenile tuber | 7.25 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.01 | |
| Mother_Juven | Mother tuber of Juvenile | 3.91 |