Gene detail

Detail information of GWHGAAEX016916/evm.TU.scaffold_79.162

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|110638409\|ref\|YP_678618.1\|	5.00E-13	patatin-like protein [Cytophaga hutchinsonii ATCC 33406]
KOG	KOG0513	6.00E-108	Ca2+-independent phospholipase A2
nr	gi\|743864678\|ref\|XP_010904638.1\|	3.68E-156	PREDICTED: patatin-like protein 3 [Elaeis guineensis]
Swissprot	tr\|Q9SV43\|PLP7_ARATH	2.00E-108	Patatin-like protein 7
trEMBL	tr\|A2XML9\|A2XML9_ORYSI	4.00E-124	Putative uncharacterized protein {ECO:0000313\|EMBL:EAY92079.1}
TAIR	AT3G54950	6.00E-108	patatin-like protein 6

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000082	3025536	3027622	-

Transcript Sequence
>GWHTAAEX016916 CTCCCATCTCCCATCTCCCATCAACCGCATAGGTCCTATTCACCTCTTTCGCCCTTCCTTCGTCCTTAACAGTTCTTCGTTAAATTCTACCCCGGAGAATGGCATCAGCGCCGGCGTCGATCGATCCAATCTTCGATGTCAACAAGCTCAGCTACGACATCTTCAAAGTACTCGAATCTAAGTTTCTATCTGGTTACGATGATCCCATGCTCTTCCTGAACGGATCGTCCCTTCCTCAAACCACCCCGGCAATGATTCCCAAATCTCCGGCGATTTCACACGGAAAGGTGTGCATCCTCTCTATCGACGCAATCAGCGATCATCTCCTTGCCACCGCCCTTCTCGCCCACCTAGAATCCTTCCTCCGCATCCAATCCGGCGAGCCCACCGCTCGGATCGCCGATTTCTTTGACATCGCCGCCGGCTCCGGCACCGGCGGCGTCATTTCTGCCATGCTCTTCACCCGCGGCACTGATGGCCGCCCTCTCTTCTCTGCGGAAGAAGCCCTCTACTACCTCGCGAAGAAAGTTGCGGAATGCTCCGGAAGGCCGAGGGGACTTTTCTGCGGAATGATCCGGAAGCCGACAGGAGGAGCATTCCGTCGGGCATTTGGTGAAGCGACGCTGCGAGACACCGTAAAGCCGCTGCTCATCCCCTGCTTCGATCTCTCCACCAAAGCGCAGTTCCTCTTCTCAAGAGCGGACGCCGTTGAAAGCGACGAGTTCGATTTCCGAATCCGAGAGATCTGCGCTGCAACCTGCGGAGAGGAGAATGCGATGGAGATGAAATCCGTCGACGGGCGGACGAGAATCGCCGCCGTCGGAGGAGCCATCGCAATGCCGAATCCGACGGCGGCGGCCATCACCCACGTGCTTCACAACAAGCAGGAGTTCCCATTCGTCTCCGGCGTCGAGAATCTTCTCGTCATGTCGATCGCCGGCGTCGATTGTGCCGATTCTTCCGGCCCATCAACGGCTGAGGTTTTGCGGATTTCGGGGCAGGGGATGGCTGACATGATCGATCAGGCCATCGCCATGGCGTTCTCGCACAAATGGTCGAAGAACTATTTTCGTCTTCAGGTACATGGGTTGGGCCATGACACGATAAAAGGCTCAAAAAAGACCTCAGGTAGAAACCCGGAGAAGCTGCTGCAAAAAGCCGAGGAGACAATACTGTGGCATAGAGATGTGGAATCTGTGCTCTTTCAAGGGAAGCGACTCGCGCAGGAAACGAACGCGCAGAAACTCGAACGGTTCTCAGCTGCGTTGATCGAAGAGCAGATGAAGAGGAGGAAGTCTCCGATTCCCACCGTCGTGATTAAGCAGTCGATTTCGGGTTAACGTGTTGAAGTATTTTGGGACACGACACTGACACGACACGAAATTGTTCGTTGAAGGAAGCACTAGTAGGTTTTTTGTTTTTGTTTTTTCCCAGGTTCCCGGAAATTGGTCAAGAGGGGAGCTGAGCGGGACGCTGGTTTGGTAATGGTAGAGGTGCTGCCGTGCGTGTAGCCGTGACTTTAGTTGTAATTAATTGCTGATTAGTTTTGGCTTAGTGAAGATTCTCTGCGGCGTTTTGCTTTAAATAACGGCAAAGGACAGAACTACGGACACTTTAATATGATGCGGCCTGGCCCATGGTGGCCACGTCGCTCCATTGGGCCGTTTGGTCGTAATGTCTTATGTCGGCCCGTAAAAGGCCCATGGTCTGATAGAGCTGTGGATCTTGTGGCTGAGCGTGACACGCTTGTGTAGCCCTCCTACCTCGCGTGATACGTGGCGCTCAGAGAAATAAGCTAAGTTCATTAAATATATTCTAAGTTTTTTTAATTATAAAACATAAAGTAAATTGAGAAATAAAGTGTCTATTTTAAAATGTACTGTTTAACTTTAAATCGCGCTACCATTTTAAAGATACCCATCCC

Network for GWHGAAEX016916

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006629	Biological Process	lipid metabolic process

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.360
SRP064423	SRR2545915	Juvenile tuber	1.570
SRP108465	SRR5643513	five period of Gastrodia elata	1.890
	SRR5643514	five period of Gastrodia elata	4.390
	SRR5643515	five period of Gastrodia elata	2.300
	SRR5643524	five period of Gastrodia elata	3.550
	SRR5643525	five period of Gastrodia elata	3.080
	SRR5643528	five period of Gastrodia elata	0.620
	SRR5643658	five period of Gastrodia elata	1.000
	SRR5643659	five period of Gastrodia elata	3.470
	SRR5643660	five period of Gastrodia elata	2.490
	SRR5643661	five period of Gastrodia elata	3.290
	SRR5643662	five period of Gastrodia elata	2.930
	SRR5643663	five period of Gastrodia elata	2.100
	SRR5643664	five period of Gastrodia elata	3.200
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.290
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.250
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.440
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.580
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.030
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.810
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.650
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.240
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.180
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.180
SRP279888	Gastro	Gastrodia elata tuber	0.63
	Juven	Juvenile tuber	0.57
	Mother_Gastro	Mother tuber of Gastrodia elata	0.53
	Mother_Juven	Mother tuber of Juvenile	0.75