Detail information of GWHGAAEX016917/evm.TU.scaffold_79.164


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG32308.00E-15Vacuolar assembly/sorting protein DID4
nrgi|224115556|ref|XP_002317065.1|5.06E-15SNF7 family protein [Populus trichocarpa]
Swissprottr|Q0WTY4|VPS2B_ARATH2.00E-15Vacuolar protein sorting-associated protein 2 homolog 2
trEMBLtr|B9I0U7|B9I0U7_POPTR2.00E-15SNF7 family protein {ECO:0000313|EMBL:EEE97677.1}
TAIRAT5G445608.00E-15SNF7 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008230552453069618+
Transcript Sequence

Network for GWHGAAEX016917

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12191CHMP2A Endocytosis map04144
Necroptosismap04217

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3.420
SRR2545915Juvenile tuber2.950
SRP108465SRR5643513five period of Gastrodia elata1.830
SRR5643514five period of Gastrodia elata0.870
SRR5643515five period of Gastrodia elata0.850
SRR5643524five period of Gastrodia elata2.050
SRR5643525five period of Gastrodia elata2.240
SRR5643528five period of Gastrodia elata2.100
SRR5643658five period of Gastrodia elata2.120
SRR5643659five period of Gastrodia elata1.480
SRR5643660five period of Gastrodia elata3.060
SRR5643661five period of Gastrodia elata3.710
SRR5643662five period of Gastrodia elata4.150
SRR5643663five period of Gastrodia elata3.580
SRR5643664five period of Gastrodia elata3.790
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11.170
SRR6049655Rhizomagastrodiae_C368-T10_good_13.220
SRR6049656Rhizomagastrodiae_C368-T07_good_11.180
SRR6049657Rhizomagastrodiae_C368-T07_good_10.530
SRR6049658Rhizomagastrodiae_C368-T04_good_10.880
SRR6049659Rhizomagastrodiae_C368-T04_good_10.770
SRR6049660Rhizomagastrodiae_C368-T01_good_10.390
SRR6049661Rhizomagastrodiae_C368-T04_good_10.950
SRR6049662Rhizomagastrodiae_C368-T01_good_10.710
SRR6049663Rhizomagastrodiae_C368-T01_good_11.930
SRR6049664Rhizomagastrodiae_C368-T10_good_10.800
SRR6049665Rhizomagastrodiae_C368-T10_good_10.800
SRP279888GastroGastrodia elata tuber 1.72
JuvenJuvenile tuber1.05
Mother_GastroMother tuber of Gastrodia elata 0.54
Mother_JuvenMother tuber of Juvenile 1.49