Detail information of GWHGAAEX016918/evm.TU.scaffold_79.165


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG32309.00E-111Vacuolar assembly/sorting protein DID4
nrgi|695023730|ref|XP_009399052.1|5.42E-110PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q0WTY4|VPS2B_ARATH3.00E-111Vacuolar protein sorting-associated protein 2 homolog 2
trEMBLtr|V4LAZ3|V4LAZ3_EUTSA3.00E-110Uncharacterized protein {ECO:0000313|EMBL:ESQ39522.1}
TAIRAT5G445609.00E-111SNF7 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008230808513102625+
Transcript Sequence

Network for GWHGAAEX016918

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03357.20Snf7171857.20E-36
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12191CHMP2A Endocytosis map04144
Necroptosismap04217

Gene Ontology

GO term OntologyName
GO:0007034Biological Processvacuolar transport

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.090
SRR2545915Juvenile tuber8.950
SRP108465SRR5643513five period of Gastrodia elata8.360
SRR5643514five period of Gastrodia elata9.340
SRR5643515five period of Gastrodia elata8.990
SRR5643524five period of Gastrodia elata7.330
SRR5643525five period of Gastrodia elata9.300
SRR5643528five period of Gastrodia elata7.750
SRR5643658five period of Gastrodia elata12.900
SRR5643659five period of Gastrodia elata6.790
SRR5643660five period of Gastrodia elata8.470
SRR5643661five period of Gastrodia elata6.770
SRR5643662five period of Gastrodia elata5.820
SRR5643663five period of Gastrodia elata5.690
SRR5643664five period of Gastrodia elata6.320
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_17.590
SRR6049655Rhizomagastrodiae_C368-T10_good_111.030
SRR6049656Rhizomagastrodiae_C368-T07_good_16.880
SRR6049657Rhizomagastrodiae_C368-T07_good_19.220
SRR6049658Rhizomagastrodiae_C368-T04_good_14.140
SRR6049659Rhizomagastrodiae_C368-T04_good_18.530
SRR6049660Rhizomagastrodiae_C368-T01_good_18.050
SRR6049661Rhizomagastrodiae_C368-T04_good_15.010
SRR6049662Rhizomagastrodiae_C368-T01_good_16.800
SRR6049663Rhizomagastrodiae_C368-T01_good_17.100
SRR6049664Rhizomagastrodiae_C368-T10_good_110.150
SRR6049665Rhizomagastrodiae_C368-T10_good_110.150
SRP279888GastroGastrodia elata tuber 6.08
JuvenJuvenile tuber3.24
Mother_GastroMother tuber of Gastrodia elata 6.48
Mother_JuvenMother tuber of Juvenile 3.03