Gene detail

Detail information of GWHGAAEX016919/evm.TU.scaffold_79.166

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2651	9.00E-179	rRNA adenine N-6-methyltransferase
nr	gi\|743762155\|ref\|XP_010906736.1\|	0	PREDICTED: protein RRNAD1 isoform X1 [Elaeis guineensis]
trEMBL	tr\|M0S7K1\|M0S7K1_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P13100_001}
TAIR	AT1G16650	9.00E-179	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000082	3109733	3154096	-

Transcript Sequence
>GWHTAAEX016919 GTAACACAATAATTTTTATAATTTACCTATAAACCACGTGATTCTTAGATATTACCCGTAAACTACTGTGCTGGCGAGATTTAGACCGACCTTGGAACGACGCTCTCGGAGTTGCGGAGCGCGCAGGATCTCAGCTTGAACAAATTCCCGCGCCTTCTAATTTCTACAAGCTCCAGGCCCGAGAGCTCTCCCACAATTCGCTCGCCGGCCAAATCCCTCGGCAGTTGCGACGAATGAGCAGCTTGGTGTTTTTGATTCTCCCAAATAGGGCAGCCCTTCGATTAACGCCGGTACCCTTCCGACGAGCCGGTTGCTCCCGGCCATCTACGCCTTAAACGGCGTTGACTACTCTGTTAGCATAGTGGCATATTTGATTCTCTTAAAGATTAAAGTGATACATTGATAAAATTTAAGAAATCTGTGTTTTATAGCCGATCGTCTTCTTAGAATCTCCTGCTATGGCCTCCACTGCTCGCCGGTACTCCTGCGAGACTGCGCTTGAAACTCTAGAATGGATGAAAGCAATTGCAGACTTCTTGTTACCCTTCAGGCCACTCATCGACGCCCATGTCATCAATTTTTTTAAGGATAAGCTTTGGGAATCAGTAGACAGCCGATGGATGGAATGCCTCACGAAAGAGCCTGTAGAGAATTTATTGGGTATACCATCCGCGATAATTCAGGGGCATTGGCCTCCTTCACTTATTGAATTCTTAGTCACATTGAAGTATCTCATACTACCAAGAGAGCAGAATTTATCAAATTCGATATTGGGAAACTTTTGTACTGCTTCATTTGGGAGCGTTATCTCGCAAGGAATGAATTCAAAGAAAAAACATGAAGTAGAAATACTAGCGTCTGCTGTTAACACTATAGCTCATGGTATTAATGCCCAAAAGATCATTGATGTTGGTTCAGGACAGGGTTACCTTGCACAAGTTCTATCATTTGAGTATCAGCTTTCTGTGGTTGCTATAGATTCTTCTTTACACCATTCAGCTGTCACAAGTGCTCGTGCTAATAGAATAATGAAACATTATGCAGCCAATTTGCATAAAACTCAAGATGGAACTAAACTTCTAAAGGTGCCCCAGACTATCACCTGCCAAGTACTTTCAAGCGAGTCTCTTGCGACTTTAAGCATTGGGACATTAGATGATCAGAAACAAACTGATGGTTTGGGGAGTAGCTTCATTAGAAGTTCAGAATTTGATGTATTTAAAGCTGCTGGTGAATGTAAAAACAAGAATAATGGATCTTCTTTAGTTCTTGCAGGGCTTCATGCTTGTGGAGATTTGTCTATAAACATACTAAGGGCTTTTGTAGACTGCGATCAAGCAAAAGCTCTTATTAGCGTTGGCTGTTGTTACAACTTACTCACCGAAGATATTTCTGAGAAGACGAGCAAGTTCTCTGGCTTCCCTTTGAGCAATGGAGCCAAATTGTTGGGGTTAACCGTCGGAAAAAGTGCACGTGATCTTGCTTGTCAGAGTGCACAGAGGTGGAAAAGTTTGACAAAGAACACTGCTCTTCAGAATTTCGAGCTACATGCATTTCATGCCATTTTTCAAATGGTTCTAGATAAGTATTATCCGGAACTCATGTTATCAAATCCATCTATTGGACGGCGTGGGAAAGCTCTGAGACGCCAGCAGATGAGGAAAGCAATAGAGTCTCAATTTGGCTCAGAACGTGCCTTTTGTTCATTTAAGTCTGAGGATGCAAGCAATGTAGGCAACAAATCTGTTGTTCTGCAAGCTTGTGGAGTTGAAGTGAGCAAAGAACTTCATGATGGTACAGCATTAAAAGATAATATGAGTACCAAGCCAGTGGTAATATTGGAAAGACCCTGTTGTTCTGAAGGTTATATTTTAGATCAGTCTACGACAAACTTTTATGGATTTGCACTTTTTAAAGAGTTCTGCAAGTCGGGACTACAGCGCCTGGGGTTGAAATATCAGGATGACAACTTGCCTGAGTTATGGACAAGAGCTAAACCTTTTTTTGAATTCATAGGACCATACTGGTCTCTGCGCGCTGCCTTTGGGCCATTGATCGAAACTTATATATTACTCGATAGATTATTGTTTCTACAAGAGCATGGTAATTTTGTGGAAGCACAATTGGTTCCCTTATTTGATCCCACTCTGTCACCAAGAAATGTTGCAATTGTGGCTCGAAAACGTGATGCAAATTCAGCCAGTGCATGAACTGGAGAAACCTTCCATTGGAACTTTATTCTGTGGCACATGCGTATTTTATTGTATCAGCAGATATGTAGGCAGATATGATGACTGCTGAGGAAGAATATATAAGCAGTTCTTGTGAAGATCCACAATAGAAGATATAAAAGCAATATTTTCTTTTTTTTAATCAGGGTGTAAATGAGTTGAAGGCTTGTTTATATGAATAAAGTTAATGTATTAGATAAATATCTTTGTGCAAGTACCCTCTCAAATCATTATAAAGATGTATGCTGCACCTAATCTCTTATAATTAGGAAAAAGTTAGTCTCAGATTAATAAAAATGTATGAAATCTCATATTGGCATATAAGTAAAGAGCTGCAAATATAAC

Network for GWHGAAEX016919

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13679.5	Methyltransf_32	124	309	3.70E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	13.940
SRP064423	SRR2545915	Juvenile tuber	9.720
SRP108465	SRR5643513	five period of Gastrodia elata	5.350
	SRR5643514	five period of Gastrodia elata	6.410
	SRR5643515	five period of Gastrodia elata	4.880
	SRR5643524	five period of Gastrodia elata	6.850
	SRR5643525	five period of Gastrodia elata	6.890
	SRR5643528	five period of Gastrodia elata	7.440
	SRR5643658	five period of Gastrodia elata	5.510
	SRR5643659	five period of Gastrodia elata	3.900
	SRR5643660	five period of Gastrodia elata	4.130
	SRR5643661	five period of Gastrodia elata	3.810
	SRR5643662	five period of Gastrodia elata	4.680
	SRR5643663	five period of Gastrodia elata	4.830
	SRR5643664	five period of Gastrodia elata	3.760
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.410
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.320
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.110
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.590
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.640
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.910
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.140
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.900
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.940
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.940
SRP279888	Gastro	Gastrodia elata tuber	4.40
	Juven	Juvenile tuber	8.66
	Mother_Gastro	Mother tuber of Gastrodia elata	7.72
	Mother_Juven	Mother tuber of Juvenile	9.67