Detail information of GWHGAAEX016920/evm.TU.scaffold_79.167


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743762170|ref|XP_010906805.1|1.53E-102PREDICTED: transcription factor PIF4-like isoform X1 [Elaeis guineensis]
Swissprottr|Q8GZM7|PIF1_ARATH1.00E-39Transcription factor PIF1
trEMBLtr|M0SV07|M0SV07_MUSAM2.00E-84Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P02280_001}
TAIRAT2G201809.00E-39phytochrome interacting factor 3-like 5

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008232070963212481-
Transcript Sequence

Network for GWHGAAEX016920

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00010.25HLH2923372.30E-12
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilybHLH

KEGG pathway

KO Enzyme pathway mapID
K16189PIF4 Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName
GO:0046983Molecular Functionprotein dimerization activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.310
SRR2545915Juvenile tuber8.040
SRP108465SRR5643513five period of Gastrodia elata8.750
SRR5643514five period of Gastrodia elata8.350
SRR5643515five period of Gastrodia elata4.990
SRR5643524five period of Gastrodia elata11.460
SRR5643525five period of Gastrodia elata24.780
SRR5643528five period of Gastrodia elata25.350
SRR5643658five period of Gastrodia elata23.610
SRR5643659five period of Gastrodia elata2.460
SRR5643660five period of Gastrodia elata2.990
SRR5643661five period of Gastrodia elata2.290
SRR5643662five period of Gastrodia elata2.940
SRR5643663five period of Gastrodia elata2.290
SRR5643664five period of Gastrodia elata3.280
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.320
SRR6049655Rhizomagastrodiae_C368-T10_good_114.110
SRR6049656Rhizomagastrodiae_C368-T07_good_19.150
SRR6049657Rhizomagastrodiae_C368-T07_good_18.680
SRR6049658Rhizomagastrodiae_C368-T04_good_17.570
SRR6049659Rhizomagastrodiae_C368-T04_good_15.390
SRR6049660Rhizomagastrodiae_C368-T01_good_17.410
SRR6049661Rhizomagastrodiae_C368-T04_good_19.890
SRR6049662Rhizomagastrodiae_C368-T01_good_112.210
SRR6049663Rhizomagastrodiae_C368-T01_good_19.510
SRR6049664Rhizomagastrodiae_C368-T10_good_112.460
SRR6049665Rhizomagastrodiae_C368-T10_good_112.460
SRP279888GastroGastrodia elata tuber 4.31
JuvenJuvenile tuber8.85
Mother_GastroMother tuber of Gastrodia elata 16.23
Mother_JuvenMother tuber of Juvenile 13.37