Gene detail

Detail information of GWHGAAEX016928/evm.TU.scaffold_79.176

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|15892687\|ref\|NP_360401.1\|	6.00E-130	branched-chain alpha-keto acid dehydrogenase subunit E2 [Rickettsia conorii str. Malish 7]
KOG	KOG0557	0	Dihydrolipoamide acetyltransferase
nr	gi\|672163830\|ref\|XP_008801773.1\|	0	PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Phoenix dactylifera]
Swissprot	tr\|Q5M729\|ODP23_ARATH	0	Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial (Precursor)
trEMBL	tr\|M0RGD1\|M0RGD1_MUSAM	0	Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256\|RuleBase:RU361137}
TAIR	AT3G13930	0	Dihydrolipoamide acetyltransferase, long form protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000082	3378854	3398986	+

Transcript Sequence
>GWHTAAEX016928 ATGAGGGGAGTTATATGGGTGCAGGAGGGGAGGGAATCGGCCAATAGGGCCGATAGTCTGAGCCAAAATAGGCGCAGGATGGGGTGCTGCCTGGCGCTCTGGCATGGAAGCTTCTTCTGCCCGCCAGAGCAGGCATGGTATTTAGTTCACTTTTTACTTTTGCAGATCAGGAATACTCAGAATATTCTTCAACATAGACATGCTTCAACTGCCTATGCTTCCTATTCTTCTTCTGATGCTGTTGCTTTTATTAGCAGAGGAGATGATCTTGGAAGGAGCCGTACCTGTGGTTTGCTTGGTAGAGAAGCAGCAGCTAACATGTCTGTGGGATGCTCCTTAAAAACCAAGGCTTTTTCTACAGCATTCTCTTTACCTAATTTGGCCAGAACCACAACTACAATGAGTTTCTCAGTGTCTAGCTTTCGGTTTCGTAGTAATGTGTTGCGTTTACATGCAGCATCGGTGAGATTCTATTCAGACAATTCTGAGCTTCCCCCGCATCAGGAAATTGGAATGCCTTCCCTTTCTCCTACCATGACAGAGGGAAACATCGCAAGGTGGTTGAAGAAGGAAGGAGATAAAATATCTCCTGGTGAAGTGCTCTGTGAAGTCGAAACTGATAAAGCTACTGTGGAAATGGAGTGCATGGAAGAAGGATATCTTGCTAAAATTGTTAAAGGGGATGGTGCCCAAAACATAAAAGTTGGAGAGATCATTGCTGTAACTGTGGAAGAAGAGGAAGGTCTCAGTGAATTTAAAAATTATCAAGTCTCAGCATCTTCTGCTTCTTCAGCTTTTTCAGCTGAAACAAAGGCACCATCTGAGACAACGACAGCTTCATCTGAGGAGAAGCACGAACCAGTTGAATCTCCTGAGCCCAAGGTCTCTCAAACTGAAGAAACTTCGCATTCAGAAGATCGAATTTTCTCTAGTCCTCTAGCAAGAAAACTAGCAGAGGATAACAATGTTATTCTTTCAAGCCTTAAGGGTACTGGCCCTGATGGTCGCATTGTAAAGGCTGATGTTGAAGATTATTTAGCATCCACTGCAAAGACTGTGCCACATTCGAAGACAACTAGTACAGAGCAAGCGTTGAAATTTTCTGACATTCCAAATTCCCAGATAAGAAAAGTAATTTTGCTTCAATCGAAGTTTGTGTTAGTTTATATTGGTTGTACTGATACCGAATTTTACTTGTTTCAGGTAACTGCCTCTCGTTTACTGCTTTCCAAGCAAACTATTCCCCATTACTATCTCACAATAGATACTTGTGTTGACAACCTTATGCGGCTACGTGGCGAACTTAATTCTTTTCAAGAAGCTTCTGGTGGAAAACGTATATCTGTGAATGACTTAGTTATCAAGGCTGCTGCTTTGTCTCTTCAGAAGGTTCCTCAATGTAATAGTTCATGGATGAATGATTTCATCCGCCAGTATCATAATGTGAATATTAATGTTGCCGTGCAAACAGATAATGGGTTGCTTGTGCCTGTTGTCAAGGATGCAGACAAGAAGGGGCTATCAAAAATTGCTGAAGAAGTAAAGAGTTTGGCCCAAAAAGCCAAAGAAAACTCACTGAAGCCTGAAGAGTACGAGGGCGGTACTTTTACTATTACAAATTTGGGAGGGCCATTTGGAATCAAGCAATTCTGTGCTATAATTAATCCTCCACAATCATGCATTTTGGCTGTGGGCTCTGCTGAGAGGAGGGTAATACCTGGCGCAGGTCCCGAACAATTCGAATTTGGTTCCTTCATGTCTGTAACATTGAGCTGCGATCATCGTGTGGTTGATGGTGCGGTTGGTGCCGAGTGGCTCAAGGCATTCAAGGGCTACATTGAAAATCCAACTTCATTGTTGCTCTAA

Network for GWHGAAEX016928

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00364.21	Biotin_lipoyl	169	241	9.20E-19
PF02817.16	E3_binding	308	343	2.40E-14
PF00198.22	2-oxoacid_dh	401	621	9.00E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00627	DLAT, aceF, pdhC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of antibiotics	map01130
		Carbon metabolism	map01200
		Glycolysis / Gluconeogenesis	map00010
		Citrate cycle (TCA cycle)	map00020
		Pyruvate metabolism	map00620

Gene Ontology

GO term	Ontology	Name
GO:0016746	Molecular Function	transferase activity, transferring acyl groups

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	96.590
SRP064423	SRR2545915	Juvenile tuber	103.860
SRP108465	SRR5643513	five period of Gastrodia elata	88.860
	SRR5643514	five period of Gastrodia elata	94.330
	SRR5643515	five period of Gastrodia elata	79.000
	SRR5643524	five period of Gastrodia elata	97.440
	SRR5643525	five period of Gastrodia elata	81.520
	SRR5643528	five period of Gastrodia elata	102.260
	SRR5643658	five period of Gastrodia elata	90.930
	SRR5643659	five period of Gastrodia elata	66.710
	SRR5643660	five period of Gastrodia elata	61.530
	SRR5643661	five period of Gastrodia elata	62.080
	SRR5643662	five period of Gastrodia elata	56.500
	SRR5643663	five period of Gastrodia elata	59.400
	SRR5643664	five period of Gastrodia elata	48.430
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	89.390
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	82.150
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	85.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	82.570
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	76.550
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	78.580
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	84.830
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	76.490
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	98.540
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	75.310
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	120.530
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	120.530
SRP279888	Gastro	Gastrodia elata tuber	56.11
	Juven	Juvenile tuber	75.92
	Mother_Gastro	Mother tuber of Gastrodia elata	53.67
	Mother_Juven	Mother tuber of Juvenile	69.23