Gene detail

Detail information of GWHGAAEX016930/CADD01325.1.gene

Functional Annotation

Database	Orthologs	E value	Annotation

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000082	3426911	3431213	+

Transcript Sequence
>GWHTAAEX016930 TATAAATATATTTTATGGTTAACTATATACATATATTTTAGCTAATTTTTATGTTTATCATTAAAGAAGTACATTGTTCCAATGCCATGTCATCTAGATTAATAATGAGATATTGATTGAGAAGTTTATTAATACTTTATATTTTAAAACAAAGGAGCCATTCGAAATCTAAGTTATACAGCGTATTGTAAGGTCTTTTATTTAGATTATGCTAGTATTTATTCTGTTTTCTTTGTATAGGCAAGTGTGGAATCTCAGTGTTATATGGGTAATTTGCATCTGAGGATTTCATTTCCATTATGATGCAAACATCTTGGAGATCTAATGCCCTTTATTCACTGCCCATTCTGTTTTAAAGTTCAACGGTATTTCACATTTAGTTAACCTTGTTGTTGTAAATTTCTTTACTGTAATTTCTAAAATGTTCAAACCTCAGATTCCTCTGAATTAGAATTGCAATGCTGGATATAAAGACAGCATATTGTAATTTCATTAAAGAGTTTTCTCTGTATTATTTTATTGCTGATCGTACCTAAATGCAAGCTCACAGCTTATTGTTTGGATGGTGAAATCAACTCCATTCAATTCAAACAAATCATTTAAAAGCTTGCAAGATGGAATTCTTTCCGGTAACACTCGCCTGGTTCTGTTTGTGATTTTTTTGGCCCTTTATAACTGGAAAATCCTTTTTTTTGTTGTGCTATTCTTCTAAGCAAGCTCACTCTGTCGTGAACCCTAACTGTTGTTTCAAGGCAATTTCTTTGTTTGCGAAAATGATTGGAGGGAGTTTTTGCTTTCTTCTCCGATCCCCCGTCCTAATGCGAAGTGCACATAATCATGAGGATGGTGATTGGGTTACATTTTCTTGTGATAAGTCATGTTATGACACTTGTTTTCTTCATTTTGAAAAGCTGATGCTACTTTTCACTTCCTTTGTATGTATTAGGAGATATGATGAAAATCTAAACGATTCCCTATTGGTTTGATGGCCAGAATGATGGTGAAATTGTATTAGCTCTATCTGATCCCTCTTCTACATTATTGTGTGGCCAATCTTTAAAGCTCTTTTTAGATAGAAGCATTTTGAAGGTCCTATAGACGAGTGGCCACATATCTGTGCGATTTCGTCCAAGTTTGCCTTCGAATATGTGACCGGATCCCAAAATTCTTTTTTATCATTTCTGTTCAGTAGAACTGGTTCTTGATGAAAAAGGATTTCGAATAAGTATTGAATTTTCTGGTTTTATTTTTGGGCGAAGGACCCAGCAGAGAGGCTGGATTATCCAACGTTGAATCCTCTCTAACAAAATTCTGAATACCTTCGCAGATGAACAAAATGGGCCGTTTCATTACGGATGGAATTGGGCTTCTTTTTCATAACGGATGAGATGTGGCTAAATGCTTTTTAGTCTGCATATTTGTGTAGTGTTCATTTCTAGTGTCTATGTGGGCAAATGAGGAATCTTGTATCATATGGGTAATTTGCATCTGAGGGATTAATTTCCATTGATGCGCAACCTTGGAGATCTGATGCCCTTTTCTAAGTTTCATCCCTTGGGAGTTTGATGTTTTTTCTCAGAAGAAGCAGACTCACTATGTCCTTGAACCTGCTTTTATGCTTCAAGGCATTTTCGTCTTCTGCTCATAGCTTATTGTTTGGATGCTGAAATTAACTCCATTCAATTCAAACAAATCATTTAAAAGCTTGCAAGATGGAATTTTATCCGGTTACACTCGCCCGGTTCTGATTGTGATTTTTTAGGCCCTTTATAACTGGAAAATCCTTTTTTTTGTTGTGCTATTCTTCTAAGCAAGCTCACTCTGTCGTGAACCCTAACTGTTGTTTCAAGGCAATTTCTTTGTTTGCGAAAATGATTGGAGGGAGTTTTTCCTTTCTTCTCCGATCCCCCATCCTAGTGCGAAGTGCACATGATCATGAGGATGGTGATTGGGTTACATTTTCTTATGATAAGTCATGTTATGACACTTGTTTTCTTCATTTTGAAAAGCTGATGCTACTTTTCACTTCCTTTGTATGTATTAGGAGATATGATGAAAATCTAAACGATTCCCTATTGGTTTGATGGCCAGAATGATGGTGAAATTGTATTAGCTCTATCTGATCCCTCTTCTACATTATTGTGTGGCCAATCTTTAAAGCTCTTTTTAGATAGAAGCATTTTGAAGGTCCTATAGACGAGTGGCCACATATCTGTGCGATTTCGTCCAAGTTTGCCTTCGAATATGTGACCGGATCCCAAAATTCTTTTTTATCATTTCTGTTCAGTAGAACTGGTTCTTGATGAAAAAGGATTTCGAATAAGTATTGAATTTTCTGGTTTTATTTTTGGGCGAAGGACCCAGCAGAGAGGCTGGATTATCCAACGTTGAATCCTCTCTAACAAAATTCTGAATACCTTCGCAGATGAACAAAATGGGCCGTTTCATTACGGATGGAATTGGGCTTCTTTTTCATAACGGATGAGATGTGGCTAAATGCTTTTTAGTCTGCATATTTGTGTAGTGTTCATTTCTAGTGTCTATGTGGGCAAATGAGGAATCTTGTATCATATGGGTAATTTGCATCTGAGGGATTAATTTCCATTGATGCGCAACCTTGGAGATCTGATGCCCTTTTCTAAGTTTCATCCCTTGGGAGTTTGATGTTTTTTCTCAGAAGAAGCAGACTCACTATGTCCTTGAACCTGCTTTTATGCTTCAAGGCATTTTCGTCTTCTGCTCATAGCTTATTGTTTGGATGCTGAAATTAACTCCATTCAATTCAAACAAATCATTTAAAAGCTTGCAAGATGGAATTTTATCCGGTTACACTCGCCCGGTTCTGATTGTGATTTTTTAGGCCCTTTATAACTGGAAAATCCTTTTTTTTGTTGTGCTATTCTTCTAAGCAAGCTCACTCTGTCGTGAACCCTAACTGTTGTTTCAAGGCAATTTCTTTGTTTGCGAAAATGATTGGAGGGAGTTTTTCCTTTCTTCTCCGATCCCCCATCCTAGTGCGAAGTGCACATGATCATGAGGATGGTGATTGGGTTACATTTTCTTATGATAAGTCATGTTATGACACTTGTTTTCTTCATTTTGAAAAGCTGATGCTACTTTTCACTTCCTTTGTATGTATTAGGAGATATGATGAAAATCTAAACGATTCCCTATTGGTTTGATGGCCAGAATGATGGTGAAATTGTATTAGCTCTATCTGATCCCTCTTCTACATTATTGTGTGGCCAATCTTTAAAGCTCTTTTTAGATAGAAGCATTTTGAAGGTCCTATAGACGAGTGGCCACATATCTGTGCGATTTCGTCAAAGTTTGCCTTCGAATATGTGACCGGATCCCAAAATTCTTTTTTATCATTTCTGTTCAGTAGAACTGGTTCTTGATGAAAAAGGATTTCGAAAAAGTATTGAATTTTCTGGTTTTATATTTGGGCAAAGGACCCAGCAGAGAGGCTGGATTATCCAACGTTGAATCCTCTCTAACAAAATTCTGAATACCTTCGCAGATGAACAAAATGGGCCATTTCATTACGGATGGAATTGGGCTTCTTTTTCATAACGGATGAGATTCGGCTAAATGCTTTTTAGTCTGCATATTTGTGTAGTGTTCATTTCTAGCGTCTATGTGGGCATATGAGGAATCTTGTATCATATGGGTAATTTGCATCTGAGGGATTAATTTCCATTGATGCGAAACCTTGGAGATCTGATGCCCTTTTCTAAGTTTCATCCCTTGGGAGTTAGATGTTTTTTTATCAGAAGAAGCAGACTCACTCTGTCCTTGAACCTGCTTTGATGCTTCAAGGCATTTTCGTCTTCTGCAAAAGAGATTGGAGGGCTCTTTGCCTCTCATCTCCAGCCTCTCGACCGGTTGTGAGATTTACTGGATCATGCGGATGATGGCTGGGTTACATTTCTTTGTTCCTCTTATTGTGAGATTTACTATAAAAGATAGCAAGTAGTGCATTATCGGCCAGCTAAAGAGTGAAGGGCATTGCTGTCAGAGCTGACATTCTCAAGTCTTCTCTTAAATCTGTTTGATAATTATTTTAAGATGTATTATTTATCAGTCAGATTTAATGTAAGATAATATTTTTATTAAACTCTTATCTATCTGTTGTATTTATGTATGCTTTTCTTTAGAACTGTGAATCCAAAAAGCAAGTGAGATGCCAAACCTGTATTTATGCAAAGATTTCTTTAATTATTTAATTGTGGTTCAAATTACAAGAATTCAAAAATCAAATTACATTTTTATTTGTATTACGAATAAGCAAAAATATTTC

Network for GWHGAAEX016930

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX016930
YKYILWLTIYIYFSFLCLSLKKYIVPMPCHLDDIDEVYYFIFNKGAIRNLSYTAYCKVFYLDYASIYSVFFVASVESQCYMGNLHLRISFPLCKHLGDLMPFIHCPFCFKVQRYFTFSPCCCKFLYCNFNVQTSDSSELELQCWIRQHIVISLKSFLCIILLLIVPKCKLTAYCLDGEINSIQFKQIIKLARWNSFRHSPGSVCDFFGPLLENPFFCCAILLSKLTLSTLTVVSRQFLCLRKLEGVFAFFSDPPSCEVHIIMRMVIGLHFLVISHVMTLVFFILKSCYFSLPLYVLGDMMKITIPYWFDGQNDGEIVLALSDPSSTLLCGQSLKLFLDRSILKVLTSGHISVRFRPSLPSNMPDPKILFYHFCSVELVLDEKGFRISIEFSGFIFGRRTQQRGWIIQRILSNKILNTFADEQNGPFHYGWNWASFSRMRCGMLFSLHICVVFISSVYVGKGILYHMGNLHLRDFPLMRNLGDLMPFSKFHPLGVCFFSEEADSLCPTCFYASRHFRLLLIAYCLDAEINSIQFKQIIKLARWNFIRLHSPGSDCDFLGPLLENPFFCCAILLSKLTLSTLTVVSRQFLCLRKLEGVFPFFSDPPSCEVHMIMRMVIGLHFLMISHVMTLVFFILKSCYFSLPLYVLGDMMKITIPYWFDGQNDGEIVLALSDPSSTLLCGQSLKLFLDRSILKVLTSGHISVRFRPSLPSNMPDPKILFYHFCSVELVLDEKGFRISIEFSGFIFGRRTQQRGWIIQRILSNKILNTFADEQNGPFHYGWNWASFSRMRCGMLFSLHICVVFISSVYVGKGILYHMGNLHLRDFPLMRNLGDLMPFSKFHPLGVCFFSEEADSLCPTCFYASRHFRLLLIAYCLDAEINSIQFKQIIKLARWNFIRLHSPGSDCDFLGPLLENPFFCCAILLSKLTLSTLTVVSRQFLCLRKLEGVFPFFSDPPSCEVHMIMRMVIGLHFLMISHVMTLVFFILKSCYFSLPLYVLGDMMKITIPYWFDGQNDGEIVLALSDPSSTLLCGQSLKLFLDRSILKVLTSGHISVRFRQSLPSNMPDPKILFYHFCSVELVLDEKGFRKSIEFSGFIFGQRTQQRGWIIQRILSNKILNTFADEQNGPFHYGWNWASFSRMRFGMLFSLHICVVFISSVYVGIGILYHMGNLHLRDFPLMRNLGDLMPFSKFHPLGVRCFFIRRSRLTLSLNLLCFKAFSSSAKEIGGLFASHLQPLDRLDLLDHADDGWVTFLCSSYCEIYYKRQVVHYRPAKERALLSELTFSSLLLNLFDNYFKMYYLSVRFNVRYFYTLIYLLYLCMLFFRTVNPKSKDAKPVFMQRFLLFNCGSNYKNSKIKLHFYLYYEAKIF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.950
SRP064423	SRR2545915	Juvenile tuber	26.900
SRP108465	SRR5643513	five period of Gastrodia elata	5.710
	SRR5643514	five period of Gastrodia elata	6.790
	SRR5643515	five period of Gastrodia elata	6.920
	SRR5643524	five period of Gastrodia elata	6.360
	SRR5643525	five period of Gastrodia elata	10.010
	SRR5643528	five period of Gastrodia elata	14.140
	SRR5643658	five period of Gastrodia elata	9.290
	SRR5643659	five period of Gastrodia elata	4.980
	SRR5643660	five period of Gastrodia elata	6.430
	SRR5643661	five period of Gastrodia elata	5.230
	SRR5643662	five period of Gastrodia elata	5.430
	SRR5643663	five period of Gastrodia elata	7.800
	SRR5643664	five period of Gastrodia elata	6.180
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.690
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.140
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.670
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.580
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.510
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.670
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.660
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.340
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.370
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.900
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.010
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.010
SRP279888	Gastro	Gastrodia elata tuber	7.84
	Juven	Juvenile tuber	3.33
	Mother_Gastro	Mother tuber of Gastrodia elata	5.51
	Mother_Juven	Mother tuber of Juvenile	2.66