Detail information of GWHGAAEX016932/evm.TU.scaffold_79.178
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2826 | 1.00E-37 | Actin-related protein Arp2/3 complex, subunit ARPC2 |
| nr | gi|743755792|ref|XP_010913434.1| | 1.36E-167 | PREDICTED: actin-related protein 2/3 complex subunit 2A [Elaeis guineensis] |
| Swissprot | tr|Q8LGI3|ARC2A_ARATH | 5.00E-137 | Actin-related protein 2/3 complex subunit 2A |
| trEMBL | tr|M0SX27|M0SX27_MUSAM | 2.00E-163 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P09480_001} |
| TAIR | CE26236_2 | 1.00E-37 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000082 | 3431396 | 3438426 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016932
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04045.13 | P34-Arc | 73 | 299 | 1.00E-54 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05758 | ARPC2 | Endocytosis | map04144 |
| Regulation of actin cytoskeleton | map04810 | ||
| Fc gamma R-mediated phagocytosis | map04666 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030041 | Biological Process | actin filament polymerization |
| GO:0030833 | Biological Process | regulation of actin filament polymerization |
| GO:0034314 | Biological Process | Arp2/3 complex-mediated actin nucleation |
| GO:0015629 | Cellular Component | actin cytoskeleton |
| GO:0005885 | Cellular Component | Arp2/3 protein complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 24.080 |
| SRR2545915 | Juvenile tuber | 33.850 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 44.340 |
| SRR5643514 | five period of Gastrodia elata | 62.890 | |
| SRR5643515 | five period of Gastrodia elata | 44.710 | |
| SRR5643524 | five period of Gastrodia elata | 54.550 | |
| SRR5643525 | five period of Gastrodia elata | 57.170 | |
| SRR5643528 | five period of Gastrodia elata | 49.890 | |
| SRR5643658 | five period of Gastrodia elata | 66.140 | |
| SRR5643659 | five period of Gastrodia elata | 33.680 | |
| SRR5643660 | five period of Gastrodia elata | 50.400 | |
| SRR5643661 | five period of Gastrodia elata | 36.850 | |
| SRR5643662 | five period of Gastrodia elata | 41.000 | |
| SRR5643663 | five period of Gastrodia elata | 46.970 | |
| SRR5643664 | five period of Gastrodia elata | 47.780 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 50.950 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 34.540 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.680 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.790 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.480 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 25.240 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 47.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 47.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 44.32 |
| Juven | Juvenile tuber | 25.04 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 48.59 | |
| Mother_Juven | Mother tuber of Juvenile | 23.92 |