Gene detail

Detail information of GWHGAAEX016934/evm.TU.scaffold_79.181

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|307152491\|ref\|YP_003887875.1\|	2.00E-40	WD40 repeat-containing protein [Cyanothece sp. PCC 7822]
KOG	KOG0293	0	WD40 repeat-containing protein
nr	gi\|743863034\|ref\|XP_010943696.1\|	0	PREDICTED: uncharacterized WD repeat-containing protein C343.04c-like [Elaeis guineensis]
Swissprot	tr\|A8IZG4\|CIAO1_CHLRE	6.00E-21	Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog {ECO:0000255\|HAMAP-Rule:MF_03037}
trEMBL	tr\|M0T8J4\|M0T8J4_MUSAM	0	3-isopropylmalate dehydrogenase {ECO:0000256\|RuleBase:RU004445}
TAIR	AT5G08560	0	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000082	3459656	3505614	-

Transcript Sequence
>GWHTAAEX016934 TTTTGAGCTTATCTTAGTTGAACTTATCTACTCAAGAACATTTTATCAATTTAGCTTGTTATCAACTTAAATATATCTAAAATCAACTAAAAGTTACCTAAAAACAAATAATTAAATACTAAAATCAAATAGTTTTATCAAATCAATTAAACAACAAAATTCTAATGAATCTAATCTAAAAGACTTAGCCAAACTTATAGCCCCATCATGCCGGAACCCCGAATCAATGTCCGTGGACGCAAGCATTAACGAAATGAGAAGCAGTAGCCGATAGCCGGGGAGGAAAAAAAACCTAGCTGTCGAAATTTCGAGGCGCAGACGTCGAAGGGACTACAGCTTGCGACTTTGTGACTGTGATAAAGAATCGAGGATTCACAGGTCGTACGCATCGGCGACTCCTCGTCCGTGGCTGCACTCATCATATGCTTCGTCTTCTCGCACGCATCGACGCCCTCGTTTCTCTCCAGCGCATCATAGGACCTCACTGTTGTTATCCATACTTCTTCGACTCATGAAACCTGTTACAATCTGATTTGTTGGCATGCTTGTGGAGCCGTTTGCCTGATTCCCTTTCTAATATTTATTGATGCTAAATGGGCTGAATCTGGTATTTCATGGGAGGTCTAGATGAAATTGAACCACCTTTGAAACGTGTAAAAGGACCTTCAGTTGAACTTGATAGCATTTCAAACAAGCCATCTCTTCAAGGACACATAGTTAATTTAGGAGGCCCCATGTCTAGGCCTCTACCATCCGTAGGGAAAGAAGGCATGATTGGTTCTAAGGGTGTTATTAAAAAGGAAGAATTTATTAGGATTATTACAAAAACCTTGTATTCGCTAGGCTATGAGAAAAGTGGAAAAGTTCTTGAAGAGGAATCGGGAATAAACTTACATTCATCTACAGTAAGCCTTTTTAGGAAACAAGTGCTTGAAGGTAATTGGGATGAAAGTGTTGCAACGCTTAAGAAGATTGGCTTGAGTGAACATATCCTGAAATCTGCATCATTTTTGATATGGGAATACAAATTTTTTAACCATCTTGGGAAGGATGAAGTCATGGATGCTTTGAAGACTCTGAGAAGTGAAATTGCTCCTCTCAAAATTAACAGAAAACGTTTGCATGAACTTACGAGCTGTATAGTATCTTCTTCTCGATGTGGCTCCCTTGGGTTTGCCAATATGGATATTGATTCTCTAAAATTAGGAATGAAGCTTTTAGAGGAACTGCACAAACTTCTTCCTCCATCTGTTATGATTCCTGAGAGAAGGTTAGAGAATTTGGTTGAGCAGGCACTGTGTCTTCAAAGAGAAGCTTGTTTTTTTCACAACTCTTTAGATAAGACACTTTCTTTATACACCGATCATCAGTGCGGAAAAGAACAGATACCATCAAAAACACTCCAGGTATTGCAGGGGCACGACAATGAGGTATGGTGCCTTCAATTCTCTCACGAGGGGAAATATTTAGCATCTTCATCGAATGATAGATCCATTATTATCTGGGAGGTCCACGAAGATGCAGAAGTTTCATTGAAACACACTCTAAACGGCCATCAAAAACCAGTGGTAACGATTTCCTGGAGCCCCGATGACCGCTATCTACTATCATGTGGCATGGAAGAAGCCATAAGATGTTGGGATGTTCATTTGGGTGTATGCTTACGTGTGTACGAAAAGGCTGGTTCAAGCCTAATCTCTTGTGTTTGGTCTCCAGATGGGAAGCAGTTCTTCTCCAGTGTTACAGATAGGAGCATATTATTGTGGGATTTAGAGGGGAATGAAGTGGAATGCTGGAAAGGGCAGAGAACTACAAAGAATTCAGATATGGCTGTCACTAGGGACGGCCGGCATATCATAACACTGTGCAGGGAAATGACAATACTGCTTCTTAACTGGGATGCTAGAATTGAAAAATTGATCGAGGAGGATCAAATTGTTACTTCTTTCTGTTTGTCGAGAGATGAGAAGTTCCTGCTCGTTAACCTTTTGAACCAAGAGATTCATCTGTGGAGCATAGATGGCTCTCCTGAGCTTGTGGCGAAGTACGAAGGTCACAAACGCAGCAGATTTGTCATAAGGTCTTGTTTTGGGGGATTTGATGAGGCTTTCATTGCTAGCGGTAGTGAAGATTCACAGGTCTATATCTGGCATAGGAAGAGTGGGAGTCTGATCCAAACTTTGCCAGGTCATTCGGGTGCAGTCAACTGTGTTAGCTGGAACCCGGCAAACCCTCAAATGCTCGCCTCCGGCAGCGATGACCGCACAATTCGAGTATGGGGCGTAAAAAGACCCGATCTCAAGCGAAAGCACACTCTCAGCAATGGGTTCATCCACCAATGCAATGGAGTCAGCAAATAAACCCATTAAGGAAGAAAAGAAGAAGATGAACAAACCATCAAATGGTTATAAAAGAATAATAAAATGCAGCAGAGGATGAAAGAATGAATATTGGAGCTCAATTATTTACCCCTCTGTTCTCCGGCAGCCATTGTTTCCTTTTATTTAGAAATGTGCATCTTTTTATTATCGCTCTTTCTGTTATTTGAGTGGCATCAAATAGCAGATAAGCCTGTATAAATATTTCACTTTTTTCTAATATCTTTTCTGTGAACCATTGAGCACCCTTTTTTTTTTTTTTTTTTTT

Network for GWHGAAEX016934

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	261	297	2.50E-08
PF00400.31	WD40	308	343	2.60E-05
PF00400.31	WD40	348	385	0.001
PF00400.31	WD40	474	512	0.0026
PF00400.31	WD40	518	555	1.30E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.920
SRP064423	SRR2545915	Juvenile tuber	38.660
SRP108465	SRR5643513	five period of Gastrodia elata	38.190
	SRR5643514	five period of Gastrodia elata	37.580
	SRR5643515	five period of Gastrodia elata	34.490
	SRR5643524	five period of Gastrodia elata	36.130
	SRR5643525	five period of Gastrodia elata	38.530
	SRR5643528	five period of Gastrodia elata	35.090
	SRR5643658	five period of Gastrodia elata	40.740
	SRR5643659	five period of Gastrodia elata	35.020
	SRR5643660	five period of Gastrodia elata	33.450
	SRR5643661	five period of Gastrodia elata	32.210
	SRR5643662	five period of Gastrodia elata	37.730
	SRR5643663	five period of Gastrodia elata	33.020
	SRR5643664	five period of Gastrodia elata	35.660
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	35.850
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	34.500
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	33.340
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	35.820
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	32.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.370
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	36.380
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	34.300
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	33.410
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	36.690
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	36.690
SRP279888	Gastro	Gastrodia elata tuber	35.23
	Juven	Juvenile tuber	42.40
	Mother_Gastro	Mother tuber of Gastrodia elata	31.17
	Mother_Juven	Mother tuber of Juvenile	30.77