Detail information of GWHGAAEX016935/evm.TU.scaffold_79.184
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-174 | FOG: PPR repeat |
| nr | gi|743762237|ref|XP_010907118.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Elaeis guineensis] |
| Swissprot | tr|Q9SY02|PP301_ARATH | 4.00E-175 | Pentatricopeptide repeat-containing protein At4g02750 |
| trEMBL | tr|F6HS87|F6HS87_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB57546.1} |
| trEMBL | tr|F6HS87|F6HS87_VITVI | 1.00E-53 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB57546.1} |
| TAIR | AT4G02750 | 1.00E-174 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000082 | 3537498 | 3540366 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016935
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12854.6 | PPR_1 | 36 | 63 | 8.90E-06 |
| PF01535.19 | PPR | 70 | 98 | 1.60E-07 |
| PF01535.19 | PPR | 101 | 125 | 0.00091 |
| PF01535.19 | PPR | 135 | 160 | 6.70E-07 |
| PF01535.19 | PPR | 167 | 197 | 6.20E-05 |
| PF01535.19 | PPR | 198 | 220 | 0.031 |
| PF01535.19 | PPR | 230 | 257 | 7.90E-06 |
| PF01535.19 | PPR | 260 | 288 | 2.10E-08 |
| PF01535.19 | PPR | 291 | 316 | 5.30E-06 |
| PF01535.19 | PPR | 325 | 350 | 0.0008 |
| PF01535.19 | PPR | 353 | 380 | 1.20E-06 |
| PF12854.6 | PPR_1 | 382 | 410 | 2.80E-06 |
| PF13041.5 | PPR_2 | 413 | 460 | 1.30E-08 |
| PF01535.19 | PPR | 488 | 511 | 0.0072 |
| PF13041.5 | PPR_2 | 514 | 561 | 1.30E-09 |
| PF01535.19 | PPR | 589 | 612 | 0.083 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.890 |
| SRR2545915 | Juvenile tuber | 1.080 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.880 |
| SRR5643514 | five period of Gastrodia elata | 3.550 | |
| SRR5643515 | five period of Gastrodia elata | 2.220 | |
| SRR5643524 | five period of Gastrodia elata | 3.020 | |
| SRR5643525 | five period of Gastrodia elata | 1.410 | |
| SRR5643528 | five period of Gastrodia elata | 0.750 | |
| SRR5643658 | five period of Gastrodia elata | 0.800 | |
| SRR5643659 | five period of Gastrodia elata | 3.840 | |
| SRR5643660 | five period of Gastrodia elata | 3.460 | |
| SRR5643661 | five period of Gastrodia elata | 3.220 | |
| SRR5643662 | five period of Gastrodia elata | 3.080 | |
| SRR5643663 | five period of Gastrodia elata | 2.850 | |
| SRR5643664 | five period of Gastrodia elata | 2.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.510 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.020 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.070 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.820 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.880 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.800 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.800 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.33 |
| Juven | Juvenile tuber | 3.34 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.58 | |
| Mother_Juven | Mother tuber of Juvenile | 1.06 |