Gene detail

Detail information of GWHGAAEX016936/evm.TU.scaffold_79.185

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743792852\|ref\|XP_010923783.1\|	PREDICTED: uncharacterized protein LOC105046771 [Elaeis guineensis]
trEMBL	tr\|F6HTJ0\|F6HTJ0_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58000.1}
TAIR	AT3G22270	Topoisomerase II-associated protein PAT1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000082	3555392	3580573	-

Transcript Sequence
>GWHTAAEX016936 ATTCGGCTTCACTTAATTGTAATTAAGAAATCGACCCATTTGATACTCTGATATTTCTTTAAGCTTTAAATTAATTTATATAGGGCATAGTAGTGCCCGCAGGCCACGAGCGCTTCTTTGTTTCTATCGCCGTTACTGAATCGGAAGGAAGCCGCAGAACTCCATCCATTTGAAAGATTTCGGGGCGTTCCTGCTGTGGCGCGGAGCGGGCGAGTTAGATGAGGAGAATCGAAGCGTTGGGTGGGAGTTCTGGAAACCCTAGCTCCGATGATTGTCCCAAGTTGTTCGGCGGTGCTGCCGCAGATAATACTTGCTTTGATTCTTCACAGTATGCTTTTTTTGGTAAGGACGTTGTCGAAGAAGTTGAATTAGGTGGCCTAGAAGGCGATGACGAAGCTGCTGCACTTGTTCGCGATCTTGGGATTGACGATGAAGAATTAAATTATTCTTTCTTTGGAGGTAGAGGAGAGGATGAAGTTTTAGGTTCTTTATCTGAAATTGATGACCTTACAACCACTTTTGCAAAGCTAAGCAGAACTGTTAGTGAACCAAGGAATGCAGGAGTTATTGGTGATAGAGGAGGTTCATTTTCAAGAGAAAGTTCTTCCACCGTGGACTGGACACTTGAACCAGACTTTTCAAACTGGTTGGATCAGCAGTTTTTAGATGCTGAAAGTGTTCAAGAAGGCAAAAGATGGTGGTCACAGCCACACTTATCTCCAGCCCGGCTTTCCGAATCAAACTCCTTGTACAGAACTTCCTCGTATCCCGAGCAACCGCTGCAGCAACAGCATTTGAGTGATCCCATTTTTGTGCCTAAGCTGTCTTACTCATCTTACCACCCTGCAGGGGCCCATGCAAATGCCTCACAGCTACATCAATCAAATATACCATCTCGGCTGCCTCTATCAGCGCCTAATCTGTCTCCCATCTCTGCTTCCCAGCTTCATTTATCAGGACTGCTAAGAGGGCTGCCATGTGCTGGAAACATCGCCCAGTTTGCTCCAGCTCTTCCAATTAACAACAGGTCTCAGAGCCGATGGATGGCTGAATCTTCTCTTTTTACTGGGGAAAATCACGCTCCCTTACTTGGTTTGTTGCAGTCACAGCTGCCCCATTCCAGCGGCTTGATGGCTGCACAGCTTTTTTCTCACCAGCAGCAGCAGAGGCTACATCCCAAACCATCTCTGTCTTCGCTTTCACAGCTGCAGTCTCAGCATTTTAGCCACTTTTCGCCATCCCATATGCCAAGCAACTTCGACTCAGTTCCCAGCAGTGCCGACTTCAGAGAGCACAGGTCGAAGCCCCTGCATAAAGTGCGGCAGAACACGCGCAGTTTTCAACTTGCCGCTGACTCCTTCAACCGGAAGAGCGATGGCGGTGGATCATTGCAGTTTAGATCAAAATACATGTCTTCGGAAGAAATAGAGAGCATCCTCAGACTGCAGCATGCTGCAACACAGAGCCATGACCCTTACATAGATGACTACTACCACCAGGCTTGCTTGGCCAAGAAATCTTCCGGGCTAAGGCCTAAGCAGCCCTTCTGCCCATCGTTCATACGGGATGTTCCTTCTCGAAATCGTTCTAACAATGAGAAACCTGCGTACCTTCAGATTGATGCGCTTGGCAGGATTTCTTACTCATCCATTCGCAGGCCCCGTCCTCTGCTCGAAGTAGACCCCCCATCCGTCCTGGGCGAAGGCATTGCCGAACCGAAACCTTCTGTGAAGCCCCTTGAGCAAGAGCCCATGCTCGCCGCTCGAATCACAATTGAAGACGGGCTCTGCCTTCTCCTTGACGTGGATGACATTGATCGACTTCTAAAGTTCAGTCAAACCCAAGATGGCGGATCTCAGCTGAAGAGGCGGCGGCAGATCCTTCTGGAAGGCCTTGCAACCTCGCTTCAGCTCGCTGACCCATTTGGCCCTGGCAAAGGTACCCACTCTACAGGGCTCAGCCCAAAGGACGATCTTGTGTTTCTTCGGCTTGTCTCCCTCCCCAAAGGCCGGAAACTCCTCTCGCGCTACCTCCATCTTCTCTATCCCGCCGGCGAGCTCTCTAGAATAGTCTGCATGGCAATTTTCCGCCACCTGCGGTTCTTGTTTGGTGGCTTGCCGTCTGATCCGAACGCCGTCGAAACGAACGTAAATCTTGCTCGGACTGTCTCTTCGTGTGTGTGCAGCATGGATCTCAGCGCCCTGAGTGCGTGCCTTGCGGCCGTTGTCTGTTCATCGGAGCAGCCCCCGCTTCGCCCTCTCGGAAGCCCTGCCGGTGACGGAGCTTCTGTCATCATAAAGTCCGTCCTCGAGAGAGCGACGGAACTGCTGACGGATCTGCACGCCGCGAGTAAATACAGCGTGCCCAGCAGGGCTCTGTGGCAGGCGTCTTTTGACGCATTTTTCAACCTGCTGACTAAGTATTGCCTCAGCAAATATGATAGCATAATGCAGTCGCTGCTCGTTCAAATGCCCGGCGCCAACCTCATCGAGGCCGACGTAAATAAGGCAGTCAACAAGGAGATGCCTGTTGAGTTGTTACGCGCCAGTCTGCCCCACACCGACGAGCATCAGCGCAAGCAGCTGCTTGATTTTGCTCAGAGATCAATGCCGGTTATCGGATACAGTGGTGCTCGTGCTGGCAGCAACAATGGACCAATGCCGTCAGAATCTGTGCCCGGCTAACAATTCTTTTGTTTATAAAACAAGCTGTCATCATCAGCTTAATCATAATCATCATAATGGAGATAAATGTAGCTTGGAAGGGTGCGAACTTCAGTCGAAGTTTATGTGCGGAAAAATGGTGCTTTGGGATCGGAAAATGTATTTGAGGTTCGTCTTCTCGGGCTAGGAGCTTTGTTTTTGTGGCTCTGCATGGGAACGAACTCTGAATATTTTGGTAGTGCCTGAAACCTGTACAGGTTTGATCCTTTGGTAACTCCTTAAACTTTTTGTTTTTGTTTTGTCTTGCTGTTCTTTTTATCACGCGGCAGTGTTGTTAGGGTTTCTTCTGTGTTGTGTGGAATTTTTTGGTTTGATAATTTTCTTTGCGCCTATATATATATATACCTATATAGAAGGATTTGTCACAGATGTTTTGTTTGGGGCTTAGAAATATGAATCTCTTACTGTGAAGCTGTTGCTACTTTCCTGCTTCTTGTATTGCTGTTTGCAGTCACACTGATCTTCTCATTTATGCGAGTAATGCTTATATATCTATAGAAATAAATACTTTGCTTATAAGCATATATTTTGCCTTTGTATAAAACAAGC

Network for GWHGAAEX016936

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12617	PATL1, PAT1	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	51.880
SRP064423	SRR2545915	Juvenile tuber	44.800
SRP108465	SRR5643513	five period of Gastrodia elata	41.330
	SRR5643514	five period of Gastrodia elata	34.420
	SRR5643515	five period of Gastrodia elata	41.240
	SRR5643524	five period of Gastrodia elata	30.270
	SRR5643525	five period of Gastrodia elata	38.080
	SRR5643528	five period of Gastrodia elata	27.550
	SRR5643658	five period of Gastrodia elata	39.450
	SRR5643659	five period of Gastrodia elata	44.600
	SRR5643660	five period of Gastrodia elata	53.780
	SRR5643661	five period of Gastrodia elata	46.260
	SRR5643662	five period of Gastrodia elata	51.090
	SRR5643663	five period of Gastrodia elata	53.980
	SRR5643664	five period of Gastrodia elata	48.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	56.390
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	64.020
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	52.380
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	54.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	55.180
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	53.060
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	68.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	50.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	44.910
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	61.250
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	51.270
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	51.270
SRP279888	Gastro	Gastrodia elata tuber	48.34
	Juven	Juvenile tuber	43.21
	Mother_Gastro	Mother tuber of Gastrodia elata	33.19
	Mother_Juven	Mother tuber of Juvenile	38.27