Detail information of GWHGAAEX016943/evm.TU.scaffold_79.192
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1735 | 9.00E-73 | Actin depolymerizing factor |
| nr | gi|672139585|ref|XP_008793579.1| | 9.75E-94 | PREDICTED: actin-depolymerizing factor 11 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q2QLT8|ADF11_ORYSJ | 3.00E-84 | Actin-depolymerizing factor 11 |
| trEMBL | tr|M0S8S3|M0S8S3_MUSAM | 5.00E-90 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P17320_001} |
| TAIR | AT2G31200 | 9.00E-73 | actin depolymerizing factor 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000082 | 3746446 | 3773323 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016943
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00241.19 | Cofilin_ADF | 20 | 142 | 4.70E-36 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05765 | CFL | Regulation of actin cytoskeleton | map04810 |
| Fc gamma R-mediated phagocytosis | map04666 | ||
| Axon guidance | map04360 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030042 | Biological Process | actin filament depolymerization |
| GO:0003779 | Molecular Function | actin binding |
| GO:0015629 | Cellular Component | actin cytoskeleton |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 160.650 |
| SRR2545915 | Juvenile tuber | 142.230 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 95.410 |
| SRR5643514 | five period of Gastrodia elata | 135.850 | |
| SRR5643515 | five period of Gastrodia elata | 109.660 | |
| SRR5643524 | five period of Gastrodia elata | 141.130 | |
| SRR5643525 | five period of Gastrodia elata | 213.540 | |
| SRR5643528 | five period of Gastrodia elata | 262.650 | |
| SRR5643658 | five period of Gastrodia elata | 160.730 | |
| SRR5643659 | five period of Gastrodia elata | 67.080 | |
| SRR5643660 | five period of Gastrodia elata | 61.490 | |
| SRR5643661 | five period of Gastrodia elata | 66.530 | |
| SRR5643662 | five period of Gastrodia elata | 80.780 | |
| SRR5643663 | five period of Gastrodia elata | 82.310 | |
| SRR5643664 | five period of Gastrodia elata | 77.830 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 66.460 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 74.360 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 65.190 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 58.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 75.470 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 81.840 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 69.050 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 80.890 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 77.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 79.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 82.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 82.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 119.40 |
| Juven | Juvenile tuber | 76.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 130.65 | |
| Mother_Juven | Mother tuber of Juvenile | 111.21 |