Gene detail

Detail information of GWHGAAEX016950/evm.TU.scaffold_79.199

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672173135\|ref\|XP_008806688.1\|	1.14E-89	PREDICTED: transcription factor JUNGBRUNNEN 1-like [Phoenix dactylifera]
Swissprot	tr\|Q9SK55\|NAC42_ARATH	4.00E-76	Transcription factor JUNGBRUNNEN 1
trEMBL	tr\|M0RGG8\|M0RGG8_MUSAM	6.00E-84	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P08420_001}
TAIR	AT2G43000	1.00E-75	NAC domain containing protein 42

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000082	3877569	3879595	+

Transcript Sequence
>GWHTAAEX016950 AAAAAAATCCTTACTTTGTTGAAACATTTATTTTTAACATATTCAACGTTCAACCATATATCTCTATACGAATTTTACTTTCATATATATTCTTCAACAAATTAACAAAAAGTTCCAGTAATCTTTAATAAATCTCACGCTTACTTCATATCTTTCTTCCCATGTATCACAATTGACAGAGCTTTTATTTGAGCAGGTCATTCGCTCTTTCCTCAATCACAAAAATAGCAACAGAGACATTCGCCTCTCTCTCTCTTAAATGCATAAATAGGAAGTTCAAAATTCTTGACTTGGACTAAGCTACCCCCTTTCTTCCATGACTTTGCTTCGCATAAAGCTCTTCCCCATCTACTCTATAAACGATCTAAAAAAGCTGCATTTTTTATTTAGATCACAGAAACAGAGAATGGAGGAGCAGAGAACCAGCCTTCAAGCGGCAGAGGGAGAAGCAGAGGCGGTTCTTCCCGGATTCCGGTTTCACCCCACAGACGAGGAGCTCGTCGGATTCTACCTCCGCCAAAAAGTCGAGAAGAAGAAGCCTCTCTCCATAGACATCATCAAGCAGATTGATATCTACAAGCACGATCCATGGGACCTTGCCAAGCTGAGCGGTTTTGGAGAGAAAGAATCGTACTTCTTCAGCCTGAGGGGAAGGAAGTACAGGAACAGCATAAGGCCTAACAGAGTGACCGGCTCTGGCTTCTGGAAGGCGACGGGCATCGACCGCCCGATTTACTCCTGCAATCCCGCCGGCGATTGCATCGGCCTCAAGAAATCGTTGGTTTATTACAGTGGAAGCGCAGGCAAAGGAATTAAGACGAATTGGATGATGCATGAATTCAGGCTTCCTTCCTGCAACGAAGCAGAATCGTGGACGATTTGTAGGATATTTAAGAGGAATGTGAGTTTGAAGAAGTGTGCGCAGCAGAATCTGGGAGGGTCGAGATCGATGGCAGGGGAAGGGAATTCTGAGGCGATGGCGGGTGGCAGTGTTGAATTGCAGCCGGGTTTTGTGAAGTTGAATGATGATCAGATTTTCAGAGAAGGGAATTGGGATGAAATTGGGAGGATGGTGGATTATATGATGGAACCAGCCATCACTTATGATTGTGTATATTTTTGAAGATAAAAGAGCAGCTTTAGTAGATTTCTTTCCTGTTTTTACTGAAAGTTGTATGCTTTTATAAGAAAATTAAGAGTTTTATGCTTTTTTTTTCGAACTCTGATTGATTAAATTGCAAGCAAATATCAATTGCTTCCTCCTCAATGAAAAAAATATAGGTTACATAAATTCAAATTAAATTTTTAGATTTATTATGATGAAATTGCATCTATTATTATTATTAACTAATAGCATATTAAAAATCAGAGAGTGAAAGATATGAGACTTAATGCATAAGTCATATTTATTATTTAAATAAATTGAAAATAATTTTTCTTTTTAGATGTTGTAATAAATTTATTTTTTTATTGAATTTCATTGAATCTATTGTTCACTGATAAAATGTATAAAACAAATATTCACATACGTGTCAACATACGTGGAAAATACGGGCGATTGAGTGTGCAAACGGAGAAATACATCAGGGCTTGCTGGCAGAGGGACTCGGAAGCATTCCGCTCACAGAACGCAGAGGAGAAAGAAGCATTCCGTTCGCAAATCGCGGAGGGATTTGGAAGCTCATCTGGCCGGCCTCCCCTGTTCGGCATCCGTTAGGAAGGCTCGCTCGCCTCCCCCGCCTCGCACATCGAAGGCCATCCCGTGAAGATCTAACTGGCCTGTACATCCTCCACGCCTCGGTCGGCATTAGTAGTTTTCTTTCCCGTGATGATAGTTTGTTGCTTGAGTACTTTTTTTTTTTTTTGTTGTT

Network for GWHGAAEX016950

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.14	NAM	50	177	1.20E-30

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	57.210
SRP064423	SRR2545915	Juvenile tuber	14.750
SRP108465	SRR5643513	five period of Gastrodia elata	27.050
	SRR5643514	five period of Gastrodia elata	10.780
	SRR5643515	five period of Gastrodia elata	12.870
	SRR5643524	five period of Gastrodia elata	14.000
	SRR5643525	five period of Gastrodia elata	74.540
	SRR5643528	five period of Gastrodia elata	152.840
	SRR5643658	five period of Gastrodia elata	54.430
	SRR5643659	five period of Gastrodia elata	7.790
	SRR5643660	five period of Gastrodia elata	8.280
	SRR5643661	five period of Gastrodia elata	5.860
	SRR5643662	five period of Gastrodia elata	12.120
	SRR5643663	five period of Gastrodia elata	6.520
	SRR5643664	five period of Gastrodia elata	17.170
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.030
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.670
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.960
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	21.540
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.720
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.640
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.980
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.740
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.740
SRP279888	Gastro	Gastrodia elata tuber	7.10
	Juven	Juvenile tuber	3.88
	Mother_Gastro	Mother tuber of Gastrodia elata	69.53
	Mother_Juven	Mother tuber of Juvenile	39.61