Gene detail

Detail information of GWHGAAEX016952/evm.TU.scaffold_79.201

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672173139\|ref\|XP_008806690.1\|	0	PREDICTED: switch-associated protein 70-like [Phoenix dactylifera]
trEMBL	tr\|M0SUZ4\|M0SUZ4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P02150_001}
TAIR	AT2G30880	2.00E-160	Pleckstrin homology (PH) domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000082	3885205	3933342	-

Transcript Sequence
>GWHTAAEX016952 ATTGCAACTCGTAACTCGTGTTGATGTGTTGAAATTGAATCTACTTGATCTTCCCAACATTTGCTTGAAGTTACTTGTAGCCCATACTGTCTTTTCACTGATCTGAAACACAGAATTATTTTACTATTTTATTGTGCATCTTCTGCATTAACTCTCTGCTTCAATTTCTCGATAGAGGAATGAGGATCCACTTCATTGCCCTTCCAAATACGAATCCTTAACCATCTTCGCTCGTTGTTCCCAAGCACAACATAAACCCTAAAATTCTCTTCTATTGCTATCTTCACCATCGTTTTTACCCTACCAATGTCCTCAGCTGGAAGCTCAGATAATGTGGTGGACACGGAGAGCAGCTTGGAGAAAATCAAGAGGCAGCTGACATCAGGATCAGGGAGGCATCTATTACAGGGCCCGCTCCTCAAGCGATCGGAAACCCTGAGGAAATGGAATGAAAGATGGGTGATCCTTGACCCTACTACTGGAAAATTGGAGTACAAGTTACGGAGGAACGAACCCATTGTTAAGGGAACAATTATTTTTGATTCAGGAAGCACCATTACTCTCTCCCCTGTGAACTTCCATGGACTACCAAAATATGATGGCTGCTGTTTCTATATTGGTACCCCACAGAAAAAGGAATACTTCCTTTGCACAGAAACTCCTGGTGCTGCACGGGCTTGGGTATCTACTTTACACGCATCTCAGTTGGTCCTTAAGGCCCATAAAGAGGCTGTGAGTTCCTTAAGTGGTAGCGGTTCTGCAAAATTGGGAACTGTTGCCTCTGTTGTAGCAACTGCCAACGCAATTGCAATGGAAGCTTCCAAAGAAATTGAAGTTGCCATGAAGTTATCTCTGAGAGAAGCTCTAGGATCAATGTCATTGAAAACAAATGAAGGACATTTAGATGATCTTACAATAATGAAGGAAACGCTACGAGTTAAAGATGAAGAACTTCAGCAGTTGGCTAAAGAATTACGTGCGAAAGATTCAACCATACGAGAGATAGCAGACAAGTTAACCCAGACTGCTCAAGCTGCTGAAAAGGCTGCGTCTGCAGCTTTTGCTATGGATGAAGAGAGGAGGCATGCGTTCTCTGAGATTGAACGACTGACCAATGATTCAAATAAAAAACTGCAGGCAATCATGCTTAAGTTAAAAGAATCAGAAGAAAAGGTTGCAACATTGGGCAGAGAGAGAGAGGTCCTGTTCAAACAAAGAGACTCCGCCTTTCAAGAGGCCCGCTTATGGCGCTCCGAGCTTGCAAAAGCTAGAGAACACGCTGTTTTATCAGAAGCGGCTGTAGTGAGGGCTGAGGAAAGGGCTAGGGCCTCCCAGGCTGATGCAGGTGCTCGATCTAAAGAGGCTGCAGAAAAGGCAGCGGTTGCCGCAAAAGAAAAAGAGGAGCTCCTTGCATTTGTGAATGTTTTGCAATCTCAACTTCAAAGACTACAGAGCACCACAAAAGAAGTGCTGGAAGAGAGGCCTGAATCATGCTCAGGCTTCGATGAGACAGCGCAGCCGATGACAAAGCACGTCGACTCCGAAGACGATGTCGATAAAGCCTGCCTCAGCGATGATTCGAAGCTTGTCGAATTTTCCGGCGACGGTGGCGGCATTGTCATCCGTACCATCAGCGATGGCCAATGGAACGACTTCCAGTCGTCTGATGCGAGGTTAGCAGATGTGCGGGAGGTCTCTCTGGAGGCTGAGCGAGGCAGCCATGATATACCCGTCGTGAGCCCGCCTTCCCATCTTCATCACCCTGTAATCGGCAGTGGAGCTGGCGGCGGCGCTGGCTCTCACCCGCCTACCTGATGCAAATAATCCCTGTTTATTTCAAGCTAGCAGAAGTGAAGAATACTTCTTTTTTTAATATTTAGATTCTGGCAGCCTTGTAATTTTCTTATATTTATTGCTAAAATGGGAATGTTGTGTGAAAAAGGAGGACCTTATATTTCTTTTTTTTGTTTAGTATTTTGTCAACAGAGGAACGAATAAGCGATTTGTAAGGGAATGAGTTGGAAGATACACATTTACTTGATTGCAATATCACTTAAATCATAATATGCTTTTAATTGAATCCCTACTTCTTAAAGCCC

Network for GWHGAAEX016952

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.790
SRP064423	SRR2545915	Juvenile tuber	36.660
SRP108465	SRR5643513	five period of Gastrodia elata	27.870
	SRR5643514	five period of Gastrodia elata	27.190
	SRR5643515	five period of Gastrodia elata	28.670
	SRR5643524	five period of Gastrodia elata	28.330
	SRR5643525	five period of Gastrodia elata	28.580
	SRR5643528	five period of Gastrodia elata	26.640
	SRR5643658	five period of Gastrodia elata	27.470
	SRR5643659	five period of Gastrodia elata	29.090
	SRR5643660	five period of Gastrodia elata	29.240
	SRR5643661	five period of Gastrodia elata	30.280
	SRR5643662	five period of Gastrodia elata	34.480
	SRR5643663	five period of Gastrodia elata	33.460
	SRR5643664	five period of Gastrodia elata	34.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.320
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	40.840
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	28.440
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.540
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	43.920
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	60.840
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.500
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	41.250
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.540
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	30.020
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.210
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.210
SRP279888	Gastro	Gastrodia elata tuber	37.76
	Juven	Juvenile tuber	38.16
	Mother_Gastro	Mother tuber of Gastrodia elata	41.74
	Mother_Juven	Mother tuber of Juvenile	29.35